miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 5' -65.3 NC_005261.1 + 68540 0.87 0.015656
Target:  5'- gGCGCCCGCGCGCCCCCU--GCUGCg -3'
miRNA:   3'- aUGCGGGUGCGCGGGGGGagCGACGa -5'
23819 5' -65.3 NC_005261.1 + 28163 0.81 0.044803
Target:  5'- -cCGCUCGgGCGCCCCCCgucUCGCUGCg -3'
miRNA:   3'- auGCGGGUgCGCGGGGGG---AGCGACGa -5'
23819 5' -65.3 NC_005261.1 + 73462 0.8 0.047198
Target:  5'- cGCGUCCGCGCGCCCCCCcugggcCGCgGCg -3'
miRNA:   3'- aUGCGGGUGCGCGGGGGGa-----GCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 101113 0.77 0.07515
Target:  5'- cGCGCCUugGCGCCCUcgugguCCUCGCgcgagGCUg -3'
miRNA:   3'- aUGCGGGugCGCGGGG------GGAGCGa----CGA- -5'
23819 5' -65.3 NC_005261.1 + 39608 0.75 0.104598
Target:  5'- cGCGCCCcCGcCGCCCCCgUCGC-GCa -3'
miRNA:   3'- aUGCGGGuGC-GCGGGGGgAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 30272 0.75 0.109999
Target:  5'- gGCgGCCCGCGCGCCCgCCUggaCGCUGg- -3'
miRNA:   3'- aUG-CGGGUGCGCGGGgGGA---GCGACga -5'
23819 5' -65.3 NC_005261.1 + 115848 0.75 0.112797
Target:  5'- gUugGCCCGCGCGgCCCCCgccgaggCGCgcccgGCa -3'
miRNA:   3'- -AugCGGGUGCGCgGGGGGa------GCGa----CGa -5'
23819 5' -65.3 NC_005261.1 + 73040 0.75 0.121594
Target:  5'- -uCGCgCCACGCGCCCCCCgCGCcuaggaagGCg -3'
miRNA:   3'- auGCG-GGUGCGCGGGGGGaGCGa-------CGa -5'
23819 5' -65.3 NC_005261.1 + 109530 0.74 0.124045
Target:  5'- cGCGCCCGCcgcgggcccccucGCcacaaccgccgcgGCCCCCCUCGCcGCUg -3'
miRNA:   3'- aUGCGGGUG-------------CG-------------CGGGGGGAGCGaCGA- -5'
23819 5' -65.3 NC_005261.1 + 55565 0.74 0.124665
Target:  5'- cACGCCCACGuCGCCCCCgCagucCGCgGCg -3'
miRNA:   3'- aUGCGGGUGC-GCGGGGG-Ga---GCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 8424 0.74 0.127808
Target:  5'- gACGCUCACGgccacagacCGCgCCCCCUCGCgGCg -3'
miRNA:   3'- aUGCGGGUGC---------GCG-GGGGGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 120 0.74 0.131025
Target:  5'- cGCGCCgGCGcCGCCCCUggugCUCGCgggGCUg -3'
miRNA:   3'- aUGCGGgUGC-GCGGGGG----GAGCGa--CGA- -5'
23819 5' -65.3 NC_005261.1 + 137803 0.74 0.131025
Target:  5'- cGCGCCgGCGcCGCCCCUggugCUCGCgggGCUg -3'
miRNA:   3'- aUGCGGgUGC-GCGGGGG----GAGCGa--CGA- -5'
23819 5' -65.3 NC_005261.1 + 77832 0.74 0.134315
Target:  5'- --aGCaCCAC-CGCCCCCCUCGCcGCc -3'
miRNA:   3'- augCG-GGUGcGCGGGGGGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 43812 0.74 0.134315
Target:  5'- gGCGCCgGgCGCGCCCUCCguggagaaGCUGCUc -3'
miRNA:   3'- aUGCGGgU-GCGCGGGGGGag------CGACGA- -5'
23819 5' -65.3 NC_005261.1 + 131433 0.74 0.141127
Target:  5'- gGCGCCg--GCGCCCCCCUUGCgccGCg -3'
miRNA:   3'- aUGCGGgugCGCGGGGGGAGCGa--CGa -5'
23819 5' -65.3 NC_005261.1 + 117640 0.73 0.144649
Target:  5'- cGgGCCCGCgccGCGCCCCCC-CGCUaaGCg -3'
miRNA:   3'- aUgCGGGUG---CGCGGGGGGaGCGA--CGa -5'
23819 5' -65.3 NC_005261.1 + 100070 0.73 0.148253
Target:  5'- -cCGCCCggggGCGCGCCgcgCCCCUCGCcGCc -3'
miRNA:   3'- auGCGGG----UGCGCGG---GGGGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 110252 0.73 0.159557
Target:  5'- gGCGCCCggggggcuGCGgGCCUCCCUCGUgGCc -3'
miRNA:   3'- aUGCGGG--------UGCgCGGGGGGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 64822 0.73 0.159557
Target:  5'- cGCGCgCCGCGCGCCgggUCCgcgCGCUGCa -3'
miRNA:   3'- aUGCG-GGUGCGCGGg--GGGa--GCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.