Results 1 - 20 of 226 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 8424 | 0.74 | 0.127808 |
Target: 5'- gACGCUCACGgccacagacCGCgCCCCCUCGCgGCg -3' miRNA: 3'- aUGCGGGUGC---------GCG-GGGGGAGCGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 82370 | 0.66 | 0.464714 |
Target: 5'- cGCGCgCGCGCGCCgCCagCGCcGCc -3' miRNA: 3'- aUGCGgGUGCGCGGgGGgaGCGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 110252 | 0.73 | 0.159557 |
Target: 5'- gGCGCCCggggggcuGCGgGCCUCCCUCGUgGCc -3' miRNA: 3'- aUGCGGG--------UGCgCGGGGGGAGCGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 77006 | 0.73 | 0.159557 |
Target: 5'- cGCGCgCGCGcCGCCCUCCUCGCcgacGCc -3' miRNA: 3'- aUGCGgGUGC-GCGGGGGGAGCGa---CGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 100070 | 0.73 | 0.148253 |
Target: 5'- -cCGCCCggggGCGCGCCgcgCCCCUCGCcGCc -3' miRNA: 3'- auGCGGG----UGCGCGG---GGGGAGCGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 117640 | 0.73 | 0.144649 |
Target: 5'- cGgGCCCGCgccGCGCCCCCC-CGCUaaGCg -3' miRNA: 3'- aUgCGGGUG---CGCGGGGGGaGCGA--CGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 131433 | 0.74 | 0.141127 |
Target: 5'- gGCGCCg--GCGCCCCCCUUGCgccGCg -3' miRNA: 3'- aUGCGGgugCGCGGGGGGAGCGa--CGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 43812 | 0.74 | 0.134315 |
Target: 5'- gGCGCCgGgCGCGCCCUCCguggagaaGCUGCUc -3' miRNA: 3'- aUGCGGgU-GCGCGGGGGGag------CGACGA- -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 77832 | 0.74 | 0.134315 |
Target: 5'- --aGCaCCAC-CGCCCCCCUCGCcGCc -3' miRNA: 3'- augCG-GGUGcGCGGGGGGAGCGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 137803 | 0.74 | 0.131025 |
Target: 5'- cGCGCCgGCGcCGCCCCUggugCUCGCgggGCUg -3' miRNA: 3'- aUGCGGgUGC-GCGGGGG----GAGCGa--CGA- -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 120 | 0.74 | 0.131025 |
Target: 5'- cGCGCCgGCGcCGCCCCUggugCUCGCgggGCUg -3' miRNA: 3'- aUGCGGgUGC-GCGGGGG----GAGCGa--CGA- -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 68540 | 0.87 | 0.015656 |
Target: 5'- gGCGCCCGCGCGCCCCCU--GCUGCg -3' miRNA: 3'- aUGCGGGUGCGCGGGGGGagCGACGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 55565 | 0.74 | 0.124665 |
Target: 5'- cACGCCCACGuCGCCCCCgCagucCGCgGCg -3' miRNA: 3'- aUGCGGGUGC-GCGGGGG-Ga---GCGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 109530 | 0.74 | 0.124045 |
Target: 5'- cGCGCCCGCcgcgggcccccucGCcacaaccgccgcgGCCCCCCUCGCcGCUg -3' miRNA: 3'- aUGCGGGUG-------------CG-------------CGGGGGGAGCGaCGA- -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 73040 | 0.75 | 0.121594 |
Target: 5'- -uCGCgCCACGCGCCCCCCgCGCcuaggaagGCg -3' miRNA: 3'- auGCG-GGUGCGCGGGGGGaGCGa-------CGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 115848 | 0.75 | 0.112797 |
Target: 5'- gUugGCCCGCGCGgCCCCCgccgaggCGCgcccgGCa -3' miRNA: 3'- -AugCGGGUGCGCgGGGGGa------GCGa----CGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 30272 | 0.75 | 0.109999 |
Target: 5'- gGCgGCCCGCGCGCCCgCCUggaCGCUGg- -3' miRNA: 3'- aUG-CGGGUGCGCGGGgGGA---GCGACga -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 39608 | 0.75 | 0.104598 |
Target: 5'- cGCGCCCcCGcCGCCCCCgUCGC-GCa -3' miRNA: 3'- aUGCGGGuGC-GCGGGGGgAGCGaCGa -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 101113 | 0.77 | 0.07515 |
Target: 5'- cGCGCCUugGCGCCCUcgugguCCUCGCgcgagGCUg -3' miRNA: 3'- aUGCGGGugCGCGGGG------GGAGCGa----CGA- -5' |
|||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 73462 | 0.8 | 0.047198 |
Target: 5'- cGCGUCCGCGCGCCCCCCcugggcCGCgGCg -3' miRNA: 3'- aUGCGGGUGCGCGGGGGGa-----GCGaCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home