miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 5' -65.3 NC_005261.1 + 58764 0.66 0.421297
Target:  5'- cGCGCCgAgaGCGCCCCCagcgCGCcgGCc -3'
miRNA:   3'- aUGCGGgUg-CGCGGGGGga--GCGa-CGa -5'
23819 5' -65.3 NC_005261.1 + 129047 0.66 0.429785
Target:  5'- gACGCCCACGCuGCCgCgCCCUaCG-UGUUu -3'
miRNA:   3'- aUGCGGGUGCG-CGG-G-GGGA-GCgACGA- -5'
23819 5' -65.3 NC_005261.1 + 690 0.66 0.429785
Target:  5'- gACGCuCCGCaucgGCGCCCCCCUCc----- -3'
miRNA:   3'- aUGCG-GGUG----CGCGGGGGGAGcgacga -5'
23819 5' -65.3 NC_005261.1 + 11901 0.66 0.429785
Target:  5'- cGCGCCCgccGCGgGCCCggCCCggccggCGgCUGCg -3'
miRNA:   3'- aUGCGGG---UGCgCGGG--GGGa-----GC-GACGa -5'
23819 5' -65.3 NC_005261.1 + 131401 0.66 0.412909
Target:  5'- -cCGCCaC-CGaGCCCCCCgcCGCUGCc -3'
miRNA:   3'- auGCGG-GuGCgCGGGGGGa-GCGACGa -5'
23819 5' -65.3 NC_005261.1 + 106748 0.66 0.421297
Target:  5'- gGCGCCUcCGCGCCCgCCacgagCUUGCcgGCg -3'
miRNA:   3'- aUGCGGGuGCGCGGG-GG-----GAGCGa-CGa -5'
23819 5' -65.3 NC_005261.1 + 91492 0.66 0.421297
Target:  5'- cGCGgCCGC-CGCCCgCCCcgcgCGcCUGCUg -3'
miRNA:   3'- aUGCgGGUGcGCGGG-GGGa---GC-GACGA- -5'
23819 5' -65.3 NC_005261.1 + 104611 0.66 0.421297
Target:  5'- cGCGCgUACGCGUCcagCCCCUCGa-GCa -3'
miRNA:   3'- aUGCGgGUGCGCGG---GGGGAGCgaCGa -5'
23819 5' -65.3 NC_005261.1 + 134994 0.66 0.412909
Target:  5'- -cCGCCgGgGCGCCCCUggCGCgGCg -3'
miRNA:   3'- auGCGGgUgCGCGGGGGgaGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 77524 0.66 0.412909
Target:  5'- cGCGCCC-C-CGCCCCCgaUGCcggGCUg -3'
miRNA:   3'- aUGCGGGuGcGCGGGGGgaGCGa--CGA- -5'
23819 5' -65.3 NC_005261.1 + 57556 0.66 0.421297
Target:  5'- cACGUCgCACGCGCCCggcUCCggCGCcGCg -3'
miRNA:   3'- aUGCGG-GUGCGCGGG---GGGa-GCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 102808 0.66 0.428932
Target:  5'- gGCGCCCagccgccGCGCGCCggucugCgCCUCGCgccGCg -3'
miRNA:   3'- aUGCGGG-------UGCGCGG------GgGGAGCGa--CGa -5'
23819 5' -65.3 NC_005261.1 + 59078 0.66 0.421297
Target:  5'- aGCGCgCGCggguGCGCCgCgCCCUCGC-GCUc -3'
miRNA:   3'- aUGCGgGUG----CGCGG-G-GGGAGCGaCGA- -5'
23819 5' -65.3 NC_005261.1 + 82576 0.66 0.429785
Target:  5'- aGCaGCUCGCGCaGCgCgUCCUCGUUGCg -3'
miRNA:   3'- aUG-CGGGUGCG-CG-GgGGGAGCGACGa -5'
23819 5' -65.3 NC_005261.1 + 133282 0.66 0.421297
Target:  5'- gGCGCCg--GCGCCCgCCUCGUgGCc -3'
miRNA:   3'- aUGCGGgugCGCGGGgGGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 94423 0.66 0.421297
Target:  5'- gACGUCCGCGgcgcCGCCCCCCUCc----- -3'
miRNA:   3'- aUGCGGGUGC----GCGGGGGGAGcgacga -5'
23819 5' -65.3 NC_005261.1 + 134541 0.66 0.412909
Target:  5'- cGCGCagACGUGaCCgCCCCUUGCUGg- -3'
miRNA:   3'- aUGCGggUGCGC-GG-GGGGAGCGACga -5'
23819 5' -65.3 NC_005261.1 + 103806 0.66 0.421297
Target:  5'- gUGCGCCguUGCGCCCgCCgccaGCaGCUc -3'
miRNA:   3'- -AUGCGGguGCGCGGGgGGag--CGaCGA- -5'
23819 5' -65.3 NC_005261.1 + 82370 0.66 0.464714
Target:  5'- cGCGCgCGCGCGCCgCCagCGCcGCc -3'
miRNA:   3'- aUGCGgGUGCGCGGgGGgaGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 56400 0.66 0.412909
Target:  5'- gGgGCCCugGgCGCCCUgcgCUUCGCgGCg -3'
miRNA:   3'- aUgCGGGugC-GCGGGG---GGAGCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.