miRNA display CGI


Results 1 - 20 of 226 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 5' -65.3 NC_005261.1 + 137803 0.74 0.131025
Target:  5'- cGCGCCgGCGcCGCCCCUggugCUCGCgggGCUg -3'
miRNA:   3'- aUGCGGgUGC-GCGGGGG----GAGCGa--CGA- -5'
23819 5' -65.3 NC_005261.1 + 135617 0.66 0.438374
Target:  5'- cUGCgGCUgaagCugGCGCCCUUCaugCGCUGCUa -3'
miRNA:   3'- -AUG-CGG----GugCGCGGGGGGa--GCGACGA- -5'
23819 5' -65.3 NC_005261.1 + 135431 0.67 0.363289
Target:  5'- gUGCGCUCGCaCGCCgCCCaggcggcgcgggCGCUGCg -3'
miRNA:   3'- -AUGCGGGUGcGCGGgGGGa-----------GCGACGa -5'
23819 5' -65.3 NC_005261.1 + 134994 0.66 0.412909
Target:  5'- -cCGCCgGgGCGCCCCUggCGCgGCg -3'
miRNA:   3'- auGCGGgUgCGCGGGGGgaGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 134866 0.7 0.256405
Target:  5'- gGCGCCCGCGCcCCCgcgggCCCcUGCUGUg -3'
miRNA:   3'- aUGCGGGUGCGcGGG-----GGGaGCGACGa -5'
23819 5' -65.3 NC_005261.1 + 134541 0.66 0.412909
Target:  5'- cGCGCagACGUGaCCgCCCCUUGCUGg- -3'
miRNA:   3'- aUGCGggUGCGC-GG-GGGGAGCGACga -5'
23819 5' -65.3 NC_005261.1 + 134295 0.69 0.280785
Target:  5'- gUGgGUCCACGuCGCCgCCUUCGCcGCg -3'
miRNA:   3'- -AUgCGGGUGC-GCGGgGGGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 134148 0.68 0.327811
Target:  5'- cUGCG-CCugGCGCCaCCCgggGCUGCUg -3'
miRNA:   3'- -AUGCgGGugCGCGGgGGGag-CGACGA- -5'
23819 5' -65.3 NC_005261.1 + 133896 0.66 0.44706
Target:  5'- --aGCCCGCgGCGCgCUgcuggCCUgGCUGCUg -3'
miRNA:   3'- augCGGGUG-CGCGgGG-----GGAgCGACGA- -5'
23819 5' -65.3 NC_005261.1 + 133765 0.71 0.207895
Target:  5'- gACGCCC-CGUGCCUccacgCCCUCGUgcgGCg -3'
miRNA:   3'- aUGCGGGuGCGCGGG-----GGGAGCGa--CGa -5'
23819 5' -65.3 NC_005261.1 + 133636 0.68 0.327811
Target:  5'- cGCGCUCGcCGCGCCgCUgCgcgagCGCUGCg -3'
miRNA:   3'- aUGCGGGU-GCGCGG-GGgGa----GCGACGa -5'
23819 5' -65.3 NC_005261.1 + 133591 0.66 0.438374
Target:  5'- cGCGCUgGCGCugcucacgGCCCaCCUCGCgcugGCg -3'
miRNA:   3'- aUGCGGgUGCG--------CGGGgGGAGCGa---CGa -5'
23819 5' -65.3 NC_005261.1 + 133282 0.66 0.421297
Target:  5'- gGCGCCg--GCGCCCgCCUCGUgGCc -3'
miRNA:   3'- aUGCGGgugCGCGGGgGGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 132931 0.68 0.342275
Target:  5'- -cUGCCCuucuACGUGgUCCCCgagCGCUGCg -3'
miRNA:   3'- auGCGGG----UGCGCgGGGGGa--GCGACGa -5'
23819 5' -65.3 NC_005261.1 + 131819 0.68 0.32075
Target:  5'- gGCGCgCCGCcgcuugacgcgGCGCCCgCCU-GCUGCg -3'
miRNA:   3'- aUGCG-GGUG-----------CGCGGGgGGAgCGACGa -5'
23819 5' -65.3 NC_005261.1 + 131630 0.7 0.244313
Target:  5'- gGCGCCCgccgcgaggaccgACGgGCCCCCCgggCGCaccgucUGCg -3'
miRNA:   3'- aUGCGGG-------------UGCgCGGGGGGa--GCG------ACGa -5'
23819 5' -65.3 NC_005261.1 + 131433 0.74 0.141127
Target:  5'- gGCGCCg--GCGCCCCCCUUGCgccGCg -3'
miRNA:   3'- aUGCGGgugCGCGGGGGGAGCGa--CGa -5'
23819 5' -65.3 NC_005261.1 + 131401 0.66 0.412909
Target:  5'- -cCGCCaC-CGaGCCCCCCgcCGCUGCc -3'
miRNA:   3'- auGCGG-GuGCgCGGGGGGa-GCGACGa -5'
23819 5' -65.3 NC_005261.1 + 130642 0.68 0.32075
Target:  5'- gGCGCgCGUGCGCUCgCCgacgCGCUGCUc -3'
miRNA:   3'- aUGCGgGUGCGCGGGgGGa---GCGACGA- -5'
23819 5' -65.3 NC_005261.1 + 130272 0.73 0.167519
Target:  5'- gGCGuCCCGCGCGCCCCCgccaCGCccGCa -3'
miRNA:   3'- aUGC-GGGUGCGCGGGGGga--GCGa-CGa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.