Results 1 - 20 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23819 | 5' | -65.3 | NC_005261.1 | + | 137803 | 0.74 | 0.131025 |
Target: 5'- cGCGCCgGCGcCGCCCCUggugCUCGCgggGCUg -3' miRNA: 3'- aUGCGGgUGC-GCGGGGG----GAGCGa--CGA- -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 135617 | 0.66 | 0.438374 |
Target: 5'- cUGCgGCUgaagCugGCGCCCUUCaugCGCUGCUa -3' miRNA: 3'- -AUG-CGG----GugCGCGGGGGGa--GCGACGA- -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 135431 | 0.67 | 0.363289 |
Target: 5'- gUGCGCUCGCaCGCCgCCCaggcggcgcgggCGCUGCg -3' miRNA: 3'- -AUGCGGGUGcGCGGgGGGa-----------GCGACGa -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 134994 | 0.66 | 0.412909 |
Target: 5'- -cCGCCgGgGCGCCCCUggCGCgGCg -3' miRNA: 3'- auGCGGgUgCGCGGGGGgaGCGaCGa -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 134866 | 0.7 | 0.256405 |
Target: 5'- gGCGCCCGCGCcCCCgcgggCCCcUGCUGUg -3' miRNA: 3'- aUGCGGGUGCGcGGG-----GGGaGCGACGa -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 134541 | 0.66 | 0.412909 |
Target: 5'- cGCGCagACGUGaCCgCCCCUUGCUGg- -3' miRNA: 3'- aUGCGggUGCGC-GG-GGGGAGCGACga -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 134295 | 0.69 | 0.280785 |
Target: 5'- gUGgGUCCACGuCGCCgCCUUCGCcGCg -3' miRNA: 3'- -AUgCGGGUGC-GCGGgGGGAGCGaCGa -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 134148 | 0.68 | 0.327811 |
Target: 5'- cUGCG-CCugGCGCCaCCCgggGCUGCUg -3' miRNA: 3'- -AUGCgGGugCGCGGgGGGag-CGACGA- -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 133896 | 0.66 | 0.44706 |
Target: 5'- --aGCCCGCgGCGCgCUgcuggCCUgGCUGCUg -3' miRNA: 3'- augCGGGUG-CGCGgGG-----GGAgCGACGA- -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 133765 | 0.71 | 0.207895 |
Target: 5'- gACGCCC-CGUGCCUccacgCCCUCGUgcgGCg -3' miRNA: 3'- aUGCGGGuGCGCGGG-----GGGAGCGa--CGa -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 133636 | 0.68 | 0.327811 |
Target: 5'- cGCGCUCGcCGCGCCgCUgCgcgagCGCUGCg -3' miRNA: 3'- aUGCGGGU-GCGCGG-GGgGa----GCGACGa -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 133591 | 0.66 | 0.438374 |
Target: 5'- cGCGCUgGCGCugcucacgGCCCaCCUCGCgcugGCg -3' miRNA: 3'- aUGCGGgUGCG--------CGGGgGGAGCGa---CGa -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 133282 | 0.66 | 0.421297 |
Target: 5'- gGCGCCg--GCGCCCgCCUCGUgGCc -3' miRNA: 3'- aUGCGGgugCGCGGGgGGAGCGaCGa -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 132931 | 0.68 | 0.342275 |
Target: 5'- -cUGCCCuucuACGUGgUCCCCgagCGCUGCg -3' miRNA: 3'- auGCGGG----UGCGCgGGGGGa--GCGACGa -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 131819 | 0.68 | 0.32075 |
Target: 5'- gGCGCgCCGCcgcuugacgcgGCGCCCgCCU-GCUGCg -3' miRNA: 3'- aUGCG-GGUG-----------CGCGGGgGGAgCGACGa -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 131630 | 0.7 | 0.244313 |
Target: 5'- gGCGCCCgccgcgaggaccgACGgGCCCCCCgggCGCaccgucUGCg -3' miRNA: 3'- aUGCGGG-------------UGCgCGGGGGGa--GCG------ACGa -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 131433 | 0.74 | 0.141127 |
Target: 5'- gGCGCCg--GCGCCCCCCUUGCgccGCg -3' miRNA: 3'- aUGCGGgugCGCGGGGGGAGCGa--CGa -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 131401 | 0.66 | 0.412909 |
Target: 5'- -cCGCCaC-CGaGCCCCCCgcCGCUGCc -3' miRNA: 3'- auGCGG-GuGCgCGGGGGGa-GCGACGa -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 130642 | 0.68 | 0.32075 |
Target: 5'- gGCGCgCGUGCGCUCgCCgacgCGCUGCUc -3' miRNA: 3'- aUGCGgGUGCGCGGGgGGa---GCGACGA- -5' |
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23819 | 5' | -65.3 | NC_005261.1 | + | 130272 | 0.73 | 0.167519 |
Target: 5'- gGCGuCCCGCGCGCCCCCgccaCGCccGCa -3' miRNA: 3'- aUGC-GGGUGCGCGGGGGga--GCGa-CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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