miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 5' -65.3 NC_005261.1 + 129296 0.68 0.342275
Target:  5'- -cCGCCCGCccccgGCGCCCCgcgCCUgCGCUgGCg -3'
miRNA:   3'- auGCGGGUG-----CGCGGGG---GGA-GCGA-CGa -5'
23819 5' -65.3 NC_005261.1 + 129047 0.66 0.429785
Target:  5'- gACGCCCACGCuGCCgCgCCCUaCG-UGUUu -3'
miRNA:   3'- aUGCGGGUGCG-CGG-G-GGGA-GCgACGA- -5'
23819 5' -65.3 NC_005261.1 + 128839 0.69 0.300254
Target:  5'- cGCGCggcuggccgCCACgGUGCCCCgCCUCGUcGCUg -3'
miRNA:   3'- aUGCG---------GGUG-CGCGGGG-GGAGCGaCGA- -5'
23819 5' -65.3 NC_005261.1 + 128717 0.67 0.372565
Target:  5'- cGCGCCCGgGCcccGCCCgCCCgccgaGCUGUc -3'
miRNA:   3'- aUGCGGGUgCG---CGGG-GGGag---CGACGa -5'
23819 5' -65.3 NC_005261.1 + 126540 0.69 0.274522
Target:  5'- cGCGCcucggCCACGCGCCgCCgUCGC-GCg -3'
miRNA:   3'- aUGCG-----GGUGCGCGGgGGgAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 126460 0.73 0.163494
Target:  5'- cGCGCCaGCGCGCUCgCCUCGCgGUa -3'
miRNA:   3'- aUGCGGgUGCGCGGGgGGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 126072 0.66 0.444444
Target:  5'- -cCGCCCgccggccucggcggGCGCGCCCaUCUUCGC-GCg -3'
miRNA:   3'- auGCGGG--------------UGCGCGGG-GGGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 124270 0.68 0.345223
Target:  5'- -cCGCCCGCGCGCCCCggCCgcgacaaaaaauggCaGUUGCg -3'
miRNA:   3'- auGCGGGUGCGCGGGG--GGa-------------G-CGACGa -5'
23819 5' -65.3 NC_005261.1 + 123558 0.67 0.388378
Target:  5'- cGCGCaccgucaCACGCcgGCCCCCgUacacCGCUGCg -3'
miRNA:   3'- aUGCGg------GUGCG--CGGGGGgA----GCGACGa -5'
23819 5' -65.3 NC_005261.1 + 122797 0.7 0.250011
Target:  5'- gGCGUCCuuagagagccGCGCGCCCgccagcaCCCgCGCUGCg -3'
miRNA:   3'- aUGCGGG----------UGCGCGGG-------GGGaGCGACGa -5'
23819 5' -65.3 NC_005261.1 + 120335 0.71 0.207895
Target:  5'- cUGCGUCCccgaGCGCGUCUCCCUgCGCUGg- -3'
miRNA:   3'- -AUGCGGG----UGCGCGGGGGGA-GCGACga -5'
23819 5' -65.3 NC_005261.1 + 120184 0.72 0.189
Target:  5'- -cCGCCCACcCGCCCaaCCUgCGCUGCg -3'
miRNA:   3'- auGCGGGUGcGCGGGg-GGA-GCGACGa -5'
23819 5' -65.3 NC_005261.1 + 119725 0.69 0.280154
Target:  5'- gGCGugcccaaccccuuCCCGCGCGCCCCgCCcaugUGCUGUUu -3'
miRNA:   3'- aUGC-------------GGGUGCGCGGGG-GGa---GCGACGA- -5'
23819 5' -65.3 NC_005261.1 + 118864 0.66 0.438374
Target:  5'- cGCGCCCGCG-GCCCUggCCUCgGCcaccGCg -3'
miRNA:   3'- aUGCGGGUGCgCGGGG--GGAG-CGa---CGa -5'
23819 5' -65.3 NC_005261.1 + 118195 0.73 0.167519
Target:  5'- cGgGCCC-CGCGCCUgCCgCGCUGCg -3'
miRNA:   3'- aUgCGGGuGCGCGGGgGGaGCGACGa -5'
23819 5' -65.3 NC_005261.1 + 117640 0.73 0.144649
Target:  5'- cGgGCCCGCgccGCGCCCCCC-CGCUaaGCg -3'
miRNA:   3'- aUgCGGGUG---CGCGGGGGGaGCGA--CGa -5'
23819 5' -65.3 NC_005261.1 + 117577 0.66 0.438374
Target:  5'- -cCGCCC-CGCGCCCgCC--GCUGUc -3'
miRNA:   3'- auGCGGGuGCGCGGGgGGagCGACGa -5'
23819 5' -65.3 NC_005261.1 + 117403 0.66 0.452318
Target:  5'- gGCGCCCGacuuucggcuggaGCuggaGUCCCCCUCgggguuccggcgGCUGCUg -3'
miRNA:   3'- aUGCGGGUg------------CG----CGGGGGGAG------------CGACGA- -5'
23819 5' -65.3 NC_005261.1 + 117360 0.71 0.227866
Target:  5'- -cCGCCCGCaaggcCGCCCUCCUggaggcgCGCUGCUu -3'
miRNA:   3'- auGCGGGUGc----GCGGGGGGA-------GCGACGA- -5'
23819 5' -65.3 NC_005261.1 + 116734 0.68 0.313115
Target:  5'- -cCGCCC-UGCugaGCCCCuuuggcgCCUCGCUGCg -3'
miRNA:   3'- auGCGGGuGCG---CGGGG-------GGAGCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.