miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 3' -55.9 NC_005261.1 + 70470 0.66 0.906228
Target:  5'- aGCCcgCGCCGcggGUGCGcgcGCguGAGCa -3'
miRNA:   3'- gUGGuaGUGGCa--CAUGC---CGguCUCGg -5'
23820 3' -55.9 NC_005261.1 + 59352 0.67 0.849391
Target:  5'- cCGCCGUCGCCacgaggGUGU-CGcccGCCAGcGCCc -3'
miRNA:   3'- -GUGGUAGUGG------CACAuGC---CGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 2236 0.67 0.857252
Target:  5'- cCGCCGcgCACCG---GCGGCCAcucaGGCCg -3'
miRNA:   3'- -GUGGUa-GUGGCacaUGCCGGUc---UCGG- -5'
23820 3' -55.9 NC_005261.1 + 3856 0.67 0.857252
Target:  5'- gCGCCggCGCCGc--GCGGCCGgcGAGCa -3'
miRNA:   3'- -GUGGuaGUGGCacaUGCCGGU--CUCGg -5'
23820 3' -55.9 NC_005261.1 + 38732 0.67 0.864907
Target:  5'- gCGCCcgCAgagcCCGggccCGcGCCAGAGCCg -3'
miRNA:   3'- -GUGGuaGU----GGCacauGC-CGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 102568 0.67 0.857252
Target:  5'- aCACCGccUCGCCGUccgcGUcgGCGGCCuc-GCCc -3'
miRNA:   3'- -GUGGU--AGUGGCA----CA--UGCCGGucuCGG- -5'
23820 3' -55.9 NC_005261.1 + 15282 0.67 0.857252
Target:  5'- cCGCCGgggCGCgCG-GUcGCGGCCuccgggucgucGGAGCCg -3'
miRNA:   3'- -GUGGUa--GUG-GCaCA-UGCCGG-----------UCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 47079 0.67 0.849391
Target:  5'- gUACgCGUgcaCGCCGaagGCgGGCCAGAGCCc -3'
miRNA:   3'- -GUG-GUA---GUGGCacaUG-CCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 93510 0.67 0.857252
Target:  5'- aACCGcggCGCCGUGU-UGGCCgcgaGGaAGCCc -3'
miRNA:   3'- gUGGUa--GUGGCACAuGCCGG----UC-UCGG- -5'
23820 3' -55.9 NC_005261.1 + 2605 0.67 0.849391
Target:  5'- cCGCCGUCggcggcggggccGCCGg--GCGGCaUGGGGCCc -3'
miRNA:   3'- -GUGGUAG------------UGGCacaUGCCG-GUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 55983 0.67 0.838054
Target:  5'- cCGCCGUCGCCaucggcaaccGCGGCgGGGGCg -3'
miRNA:   3'- -GUGGUAGUGGcaca------UGCCGgUCUCGg -5'
23820 3' -55.9 NC_005261.1 + 15783 0.67 0.864907
Target:  5'- cCGCUGgcgggCGCCGcccGcGCGGCCAGcGCCg -3'
miRNA:   3'- -GUGGUa----GUGGCa--CaUGCCGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 23616 0.67 0.864907
Target:  5'- cCGCCGcUGCCGggGcGCGGCgGGGGUCg -3'
miRNA:   3'- -GUGGUaGUGGCa-CaUGCCGgUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 93606 0.67 0.864907
Target:  5'- uCGCCGUCGCCccggGUcgcgacgcCGGCCAGcAGCa -3'
miRNA:   3'- -GUGGUAGUGGca--CAu-------GCCGGUC-UCGg -5'
23820 3' -55.9 NC_005261.1 + 15202 0.67 0.841332
Target:  5'- cCGCCAUCGCgCGgucGUAgaGGCUcgccGAGCCg -3'
miRNA:   3'- -GUGGUAGUG-GCa--CAUg-CCGGu---CUCGG- -5'
23820 3' -55.9 NC_005261.1 + 29432 0.67 0.872352
Target:  5'- gGCCcgCgGCCGUGUuCGuGCCGGAGa- -3'
miRNA:   3'- gUGGuaG-UGGCACAuGC-CGGUCUCgg -5'
23820 3' -55.9 NC_005261.1 + 92921 0.67 0.872352
Target:  5'- gGCCA-CGCCGUGc-CGGC-GGAGCa -3'
miRNA:   3'- gUGGUaGUGGCACauGCCGgUCUCGg -5'
23820 3' -55.9 NC_005261.1 + 47611 0.67 0.872352
Target:  5'- cCGCCccCugCGgggGCGGCCGcGGCCg -3'
miRNA:   3'- -GUGGuaGugGCacaUGCCGGUcUCGG- -5'
23820 3' -55.9 NC_005261.1 + 110939 0.67 0.841332
Target:  5'- gCACCGagCGCCGcccgGCGGCCcacccgggAGAGCUg -3'
miRNA:   3'- -GUGGUa-GUGGCaca-UGCCGG--------UCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 106527 0.67 0.841332
Target:  5'- gCGCCAgCACCGccuccucgGcgGCGGCCGcguccGGGCCg -3'
miRNA:   3'- -GUGGUaGUGGCa-------Ca-UGCCGGU-----CUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.