Results 21 - 40 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23820 | 3' | -55.9 | NC_005261.1 | + | 118980 | 0.66 | 0.906228 |
Target: 5'- aCGCCG-CGCUGUGcuucUGC-GUCGGGGCCu -3' miRNA: 3'- -GUGGUaGUGGCAC----AUGcCGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 16252 | 0.66 | 0.886585 |
Target: 5'- -uCCG-CGCCGgg-GCcGCCGGGGCCg -3' miRNA: 3'- guGGUaGUGGCacaUGcCGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 23556 | 0.66 | 0.899913 |
Target: 5'- aGCCGUCGCag-GUGgGGC-AGGGCUg -3' miRNA: 3'- gUGGUAGUGgcaCAUgCCGgUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 62651 | 0.66 | 0.912307 |
Target: 5'- aCGCCGUUgACCGagaaggaGGCCAGcGCCa -3' miRNA: 3'- -GUGGUAG-UGGCacaug--CCGGUCuCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 97301 | 0.66 | 0.906228 |
Target: 5'- uCGgCAUCuucuCCGUccGCggGGCCGGGGCCc -3' miRNA: 3'- -GUgGUAGu---GGCAcaUG--CCGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 70706 | 0.66 | 0.906228 |
Target: 5'- gGCCcgCGCgG-GcACGGCCgAGAGCa -3' miRNA: 3'- gUGGuaGUGgCaCaUGCCGG-UCUCGg -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 55816 | 0.66 | 0.912307 |
Target: 5'- cCGCCGUaaaGgCGUGUAUaaaGGCCGG-GUCg -3' miRNA: 3'- -GUGGUAg--UgGCACAUG---CCGGUCuCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 125716 | 0.66 | 0.899913 |
Target: 5'- gGCCGcCGCgGgcu-CGGCUGGGGCCg -3' miRNA: 3'- gUGGUaGUGgCacauGCCGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 133208 | 0.66 | 0.899913 |
Target: 5'- uCGCCGaCGCCGUcgaGgcCGaGCUGGGGCCc -3' miRNA: 3'- -GUGGUaGUGGCA---CauGC-CGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 20651 | 0.66 | 0.899913 |
Target: 5'- cCGCCcgCACCGccgGUgGCGGCagcggCAGAGUg -3' miRNA: 3'- -GUGGuaGUGGCa--CA-UGCCG-----GUCUCGg -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 83016 | 0.66 | 0.912307 |
Target: 5'- cCGCCGUCGCCG---GCGcCCccgggAGGGCCg -3' miRNA: 3'- -GUGGUAGUGGCacaUGCcGG-----UCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 19548 | 0.66 | 0.912307 |
Target: 5'- cCGCCAgCGCCGUGgggaGcGCCAGcgGGCg -3' miRNA: 3'- -GUGGUaGUGGCACaug-C-CGGUC--UCGg -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 69299 | 0.66 | 0.886585 |
Target: 5'- gCGCgGggCGCCGgugGCGGCgGGAGCg -3' miRNA: 3'- -GUGgUa-GUGGCacaUGCCGgUCUCGg -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 115405 | 0.66 | 0.879579 |
Target: 5'- -gUCGUCgACCGcgGgcgGCaGCCGGGGCCg -3' miRNA: 3'- guGGUAG-UGGCa-Ca--UGcCGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 51803 | 0.66 | 0.906228 |
Target: 5'- gGCCAUgcUCGUGcUGCGGCUGGuGCg -3' miRNA: 3'- gUGGUAguGGCAC-AUGCCGGUCuCGg -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 63545 | 0.66 | 0.911709 |
Target: 5'- uGCCcgcgCGCCGUGcccgcuggcGCGGCCGGcaugaugGGCCc -3' miRNA: 3'- gUGGua--GUGGCACa--------UGCCGGUC-------UCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 103793 | 0.66 | 0.910508 |
Target: 5'- gGCCGUCuuCgGUGUGCGccguugcgcccgccGCCAGcAGCUc -3' miRNA: 3'- gUGGUAGu-GgCACAUGC--------------CGGUC-UCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 40678 | 0.66 | 0.912307 |
Target: 5'- aCGCCGUCggggaGCCGgcgcCGGCCGG-GCUc -3' miRNA: 3'- -GUGGUAG-----UGGCacauGCCGGUCuCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 122258 | 0.66 | 0.912307 |
Target: 5'- gGCCAgCGCCGcc-GCcGUCAGGGCCg -3' miRNA: 3'- gUGGUaGUGGCacaUGcCGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 2933 | 0.66 | 0.906228 |
Target: 5'- gCACCucCACCGcc-GCGGCCGGgcuccGGCCc -3' miRNA: 3'- -GUGGuaGUGGCacaUGCCGGUC-----UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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