miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 3' -55.9 NC_005261.1 + 46399 0.72 0.610115
Target:  5'- -cCCGUCGCCGacgGUgGCGucCCAGAGCCa -3'
miRNA:   3'- guGGUAGUGGCa--CA-UGCc-GGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 75307 0.72 0.610115
Target:  5'- gCACCGcgcCACCGUcgGCGGCgcgCGGAGCCc -3'
miRNA:   3'- -GUGGUa--GUGGCAcaUGCCG---GUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 64323 0.71 0.620376
Target:  5'- gGCCGUaGCCGUGccCGcGUCAGGGCCc -3'
miRNA:   3'- gUGGUAgUGGCACauGC-CGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 12622 0.71 0.620376
Target:  5'- cCGCCAcCACgGUGUaguccggcGCGGUCuGGGGCCg -3'
miRNA:   3'- -GUGGUaGUGgCACA--------UGCCGG-UCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 85789 0.71 0.620376
Target:  5'- aCGCCGUCGCUGggcagACGGCCGucGAGUa -3'
miRNA:   3'- -GUGGUAGUGGCaca--UGCCGGU--CUCGg -5'
23820 3' -55.9 NC_005261.1 + 87905 0.71 0.627564
Target:  5'- gGCCGggcgUACCGUGUgucugccgccacccGgGGCCuGGAGCCg -3'
miRNA:   3'- gUGGUa---GUGGCACA--------------UgCCGG-UCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 134024 0.71 0.640917
Target:  5'- aCGCCGcCGCCGcGcucGCGGCCAuGGCCg -3'
miRNA:   3'- -GUGGUaGUGGCaCa--UGCCGGUcUCGG- -5'
23820 3' -55.9 NC_005261.1 + 44876 0.71 0.640917
Target:  5'- cCGCCGcgagCGCCGcGgggAUGGCCGGGGCg -3'
miRNA:   3'- -GUGGUa---GUGGCaCa--UGCCGGUCUCGg -5'
23820 3' -55.9 NC_005261.1 + 101017 0.71 0.651181
Target:  5'- -uCCAgcgCGCCuGUGaacGCGGCCGGcAGCCg -3'
miRNA:   3'- guGGUa--GUGG-CACa--UGCCGGUC-UCGG- -5'
23820 3' -55.9 NC_005261.1 + 46077 0.71 0.651181
Target:  5'- cCGCCucGUgGCCGgacacgagcacGUACGGCCGgGGGCCg -3'
miRNA:   3'- -GUGG--UAgUGGCa----------CAUGCCGGU-CUCGG- -5'
23820 3' -55.9 NC_005261.1 + 52330 0.71 0.651181
Target:  5'- uCGCCGUCcuuggcgcccGCCGcGcUGCcGCCGGAGCCg -3'
miRNA:   3'- -GUGGUAG----------UGGCaC-AUGcCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 132081 0.71 0.670634
Target:  5'- cCGCCGUCGCCGcUGccgcggaggGCGGCCgcgacgcgcucguGGAGCg -3'
miRNA:   3'- -GUGGUAGUGGC-ACa--------UGCCGG-------------UCUCGg -5'
23820 3' -55.9 NC_005261.1 + 14218 0.71 0.671655
Target:  5'- gCACCAaCGCgCGcgGUGaagaccgcgcCGGCCGGGGCCu -3'
miRNA:   3'- -GUGGUaGUG-GCa-CAU----------GCCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 33154 0.71 0.671655
Target:  5'- gUAgUGUCACCGcGcgGCGGCC-GAGCCg -3'
miRNA:   3'- -GUgGUAGUGGCaCa-UGCCGGuCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 68145 0.71 0.671655
Target:  5'- gACCG-CGCCGUGgcCGGCUacacgcgcgcGGAGCUc -3'
miRNA:   3'- gUGGUaGUGGCACauGCCGG----------UCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 71049 0.71 0.671655
Target:  5'- aCACCA-CGCCGUG---GGCCAGccGCCg -3'
miRNA:   3'- -GUGGUaGUGGCACaugCCGGUCu-CGG- -5'
23820 3' -55.9 NC_005261.1 + 66018 0.71 0.671655
Target:  5'- gCGCCAcCGCCGgcgcGUcguagucgGCGGCCAcGGCCa -3'
miRNA:   3'- -GUGGUaGUGGCa---CA--------UGCCGGUcUCGG- -5'
23820 3' -55.9 NC_005261.1 + 128291 0.71 0.671655
Target:  5'- aAgCAUCACC----ACGGUCAGGGCCg -3'
miRNA:   3'- gUgGUAGUGGcacaUGCCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 86837 0.7 0.681848
Target:  5'- cCGCCAUCACCGa----GGCCAGccGGCg -3'
miRNA:   3'- -GUGGUAGUGGCacaugCCGGUC--UCGg -5'
23820 3' -55.9 NC_005261.1 + 82060 0.7 0.702101
Target:  5'- gGCCAcgUCGCCGgGUcgACGGCgugccgcagCAGGGCCu -3'
miRNA:   3'- gUGGU--AGUGGCaCA--UGCCG---------GUCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.