miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 3' -55.9 NC_005261.1 + 77646 0.8 0.22396
Target:  5'- gCGCCAUCGCCG---ACGGCCGGcGCCu -3'
miRNA:   3'- -GUGGUAGUGGCacaUGCCGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 64668 0.79 0.25228
Target:  5'- cCACuCGUCGCCGUgGUGCGGCaccgggcgcguccCGGGGCCg -3'
miRNA:   3'- -GUG-GUAGUGGCA-CAUGCCG-------------GUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 98684 0.79 0.271678
Target:  5'- cCGCCGggGCCGgagGcGCGGCCGGAGCUg -3'
miRNA:   3'- -GUGGUagUGGCa--CaUGCCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 34523 0.78 0.284819
Target:  5'- gCACCuUCGCCGUG-ACGGCCcgcGAGCUc -3'
miRNA:   3'- -GUGGuAGUGGCACaUGCCGGu--CUCGG- -5'
23820 3' -55.9 NC_005261.1 + 76046 0.77 0.312594
Target:  5'- gCGCCAUCAgCGUGgcCGGCgGGcGCCa -3'
miRNA:   3'- -GUGGUAGUgGCACauGCCGgUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 65257 0.77 0.350134
Target:  5'- cCACCGUCGCCGgGUuCaGCCGGuGCCg -3'
miRNA:   3'- -GUGGUAGUGGCaCAuGcCGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 1175 0.75 0.407867
Target:  5'- gGCCcgCGCC----GCGGCCGGGGCCg -3'
miRNA:   3'- gUGGuaGUGGcacaUGCCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 78206 0.75 0.434368
Target:  5'- aCGCCAgCGCCGUGgcUGGCCu--GCCg -3'
miRNA:   3'- -GUGGUaGUGGCACauGCCGGucuCGG- -5'
23820 3' -55.9 NC_005261.1 + 94179 0.75 0.443421
Target:  5'- cCACCAgcguggCGCgGUGcGCGGCCAGGaaguGCCg -3'
miRNA:   3'- -GUGGUa-----GUGgCACaUGCCGGUCU----CGG- -5'
23820 3' -55.9 NC_005261.1 + 107375 0.75 0.443421
Target:  5'- gCGCCGgggCGcCCGcGUccacgaACGGCCAGAGCCc -3'
miRNA:   3'- -GUGGUa--GU-GGCaCA------UGCCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 125784 0.74 0.452579
Target:  5'- gGCCAagGCCGcUGcgaacggggcUugGGCCGGGGCCg -3'
miRNA:   3'- gUGGUagUGGC-AC----------AugCCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 107944 0.74 0.499833
Target:  5'- cCGCCAcguaguCCGUGcGCGGCCgcGGGGCCa -3'
miRNA:   3'- -GUGGUagu---GGCACaUGCCGG--UCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 106984 0.73 0.529212
Target:  5'- gCGCCGcgCACCGcGU-CGGCCAGGuccGCCg -3'
miRNA:   3'- -GUGGUa-GUGGCaCAuGCCGGUCU---CGG- -5'
23820 3' -55.9 NC_005261.1 + 135570 0.73 0.539148
Target:  5'- gCACCAaggacccCAUCGUGgccACGGCCGGcGCCg -3'
miRNA:   3'- -GUGGUa------GUGGCACa--UGCCGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 86466 0.73 0.539148
Target:  5'- gGCCcgCGCCGUugauGgacGCGGCCGG-GCCg -3'
miRNA:   3'- gUGGuaGUGGCA----Ca--UGCCGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 123903 0.72 0.559203
Target:  5'- gGCCGcCGCUGUgggGUGCGGCCcGAGCa -3'
miRNA:   3'- gUGGUaGUGGCA---CAUGCCGGuCUCGg -5'
23820 3' -55.9 NC_005261.1 + 85918 0.72 0.559203
Target:  5'- gGCCugcUCgACCGUGcucuggaugGCGGCCAGGGCg -3'
miRNA:   3'- gUGGu--AG-UGGCACa--------UGCCGGUCUCGg -5'
23820 3' -55.9 NC_005261.1 + 31034 0.72 0.578444
Target:  5'- aGCCGgcgCGCCGccggGUccccagcGCGGCgGGAGCCg -3'
miRNA:   3'- gUGGUa--GUGGCa---CA-------UGCCGgUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 37918 0.72 0.579461
Target:  5'- gCGCCAcCGCUGcgcgaGUACGagcGCCGGAGCCg -3'
miRNA:   3'- -GUGGUaGUGGCa----CAUGC---CGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 100184 0.72 0.59987
Target:  5'- aCGCCGUggcggcggggCAgCGUG-GCGGCCAGcAGCCc -3'
miRNA:   3'- -GUGGUA----------GUgGCACaUGCCGGUC-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.