miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 3' -55.9 NC_005261.1 + 1401 0.66 0.893364
Target:  5'- gCGCCGcgGCCGcGgcgGCGGCgGGGGCg -3'
miRNA:   3'- -GUGGUagUGGCaCa--UGCCGgUCUCGg -5'
23820 3' -55.9 NC_005261.1 + 75461 0.66 0.899913
Target:  5'- gGCCAguuccaggCGCCGggcgGCGGCgCGG-GCCg -3'
miRNA:   3'- gUGGUa-------GUGGCaca-UGCCG-GUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 20651 0.66 0.899913
Target:  5'- cCGCCcgCACCGccgGUgGCGGCagcggCAGAGUg -3'
miRNA:   3'- -GUGGuaGUGGCa--CA-UGCCG-----GUCUCGg -5'
23820 3' -55.9 NC_005261.1 + 38930 0.66 0.899913
Target:  5'- gCGCCAa-GCCG---GCGGCCGGgcgGGCCg -3'
miRNA:   3'- -GUGGUagUGGCacaUGCCGGUC---UCGG- -5'
23820 3' -55.9 NC_005261.1 + 23556 0.66 0.899913
Target:  5'- aGCCGUCGCag-GUGgGGC-AGGGCUg -3'
miRNA:   3'- gUGGUAGUGgcaCAUgCCGgUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 13432 0.66 0.879579
Target:  5'- cCGCgCGUCgACCGgGUGCaggcaGGCCGGcGCCu -3'
miRNA:   3'- -GUG-GUAG-UGGCaCAUG-----CCGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 115405 0.66 0.879579
Target:  5'- -gUCGUCgACCGcgGgcgGCaGCCGGGGCCg -3'
miRNA:   3'- guGGUAG-UGGCa-Ca--UGcCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 69499 0.66 0.893364
Target:  5'- gCACCuguaCGCCGgcgGCGggcuGCCGGAGCUg -3'
miRNA:   3'- -GUGGua--GUGGCacaUGC----CGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 53554 0.66 0.889324
Target:  5'- gGCCG-CGCCGcGgcccaggcgcacuaGCGGCCGcGGGCCg -3'
miRNA:   3'- gUGGUaGUGGCaCa-------------UGCCGGU-CUCGG- -5'
23820 3' -55.9 NC_005261.1 + 80047 0.66 0.879579
Target:  5'- cCGCCGUCGCCacugGCGGCgGGcGCg -3'
miRNA:   3'- -GUGGUAGUGGcacaUGCCGgUCuCGg -5'
23820 3' -55.9 NC_005261.1 + 19775 0.66 0.899913
Target:  5'- -cCCGUCGCCucgaacacGCGGCCcuccGAGCCg -3'
miRNA:   3'- guGGUAGUGGcaca----UGCCGGu---CUCGG- -5'
23820 3' -55.9 NC_005261.1 + 70642 0.66 0.879579
Target:  5'- gCGCCGcggCGCUGagGUucggcgccGCGGCCGcGGGCCg -3'
miRNA:   3'- -GUGGUa--GUGGCa-CA--------UGCCGGU-CUCGG- -5'
23820 3' -55.9 NC_005261.1 + 111217 0.66 0.878151
Target:  5'- aCGCCcuucgaGUCGCCGUuaaauauccccGCGGCCGG-GCCc -3'
miRNA:   3'- -GUGG------UAGUGGCAca---------UGCCGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 101649 0.66 0.886585
Target:  5'- gCGCCG-CACCGUGcucagcaucUGCgccucguaGGCC-GAGCCg -3'
miRNA:   3'- -GUGGUaGUGGCAC---------AUG--------CCGGuCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 110617 0.66 0.886585
Target:  5'- -----aCGCCGaGcUGCGGCUGGAGCCc -3'
miRNA:   3'- gugguaGUGGCaC-AUGCCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 52966 0.66 0.899913
Target:  5'- gCGCCG-CGCCG-GUGCGGCgccggcaggCGGGGgCg -3'
miRNA:   3'- -GUGGUaGUGGCaCAUGCCG---------GUCUCgG- -5'
23820 3' -55.9 NC_005261.1 + 113061 0.66 0.879579
Target:  5'- cCACCGcUCGCUGggcauCGGCuucCAGGGCCu -3'
miRNA:   3'- -GUGGU-AGUGGCacau-GCCG---GUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 87785 0.66 0.893364
Target:  5'- uCACCGUCuuggccGCCGcGUccAUGGCCggcGGGGCUg -3'
miRNA:   3'- -GUGGUAG------UGGCaCA--UGCCGG---UCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 83016 0.66 0.912307
Target:  5'- cCGCCGUCGCCG---GCGcCCccgggAGGGCCg -3'
miRNA:   3'- -GUGGUAGUGGCacaUGCcGG-----UCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 16252 0.66 0.886585
Target:  5'- -uCCG-CGCCGgg-GCcGCCGGGGCCg -3'
miRNA:   3'- guGGUaGUGGCacaUGcCGGUCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.