Results 1 - 20 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23820 | 3' | -55.9 | NC_005261.1 | + | 83016 | 0.66 | 0.912307 |
Target: 5'- cCGCCGUCGCCG---GCGcCCccgggAGGGCCg -3' miRNA: 3'- -GUGGUAGUGGCacaUGCcGG-----UCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 106984 | 0.73 | 0.529212 |
Target: 5'- gCGCCGcgCACCGcGU-CGGCCAGGuccGCCg -3' miRNA: 3'- -GUGGUa-GUGGCaCAuGCCGGUCU---CGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 135570 | 0.73 | 0.539148 |
Target: 5'- gCACCAaggacccCAUCGUGgccACGGCCGGcGCCg -3' miRNA: 3'- -GUGGUa------GUGGCACa--UGCCGGUCuCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 86466 | 0.73 | 0.539148 |
Target: 5'- gGCCcgCGCCGUugauGgacGCGGCCGG-GCCg -3' miRNA: 3'- gUGGuaGUGGCA----Ca--UGCCGGUCuCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 85918 | 0.72 | 0.559203 |
Target: 5'- gGCCugcUCgACCGUGcucuggaugGCGGCCAGGGCg -3' miRNA: 3'- gUGGu--AG-UGGCACa--------UGCCGGUCUCGg -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 123903 | 0.72 | 0.559203 |
Target: 5'- gGCCGcCGCUGUgggGUGCGGCCcGAGCa -3' miRNA: 3'- gUGGUaGUGGCA---CAUGCCGGuCUCGg -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 31034 | 0.72 | 0.578444 |
Target: 5'- aGCCGgcgCGCCGccggGUccccagcGCGGCgGGAGCCg -3' miRNA: 3'- gUGGUa--GUGGCa---CA-------UGCCGgUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 37918 | 0.72 | 0.579461 |
Target: 5'- gCGCCAcCGCUGcgcgaGUACGagcGCCGGAGCCg -3' miRNA: 3'- -GUGGUaGUGGCa----CAUGC---CGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 100184 | 0.72 | 0.59987 |
Target: 5'- aCGCCGUggcggcggggCAgCGUG-GCGGCCAGcAGCCc -3' miRNA: 3'- -GUGGUA----------GUgGCACaUGCCGGUC-UCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 107944 | 0.74 | 0.499833 |
Target: 5'- cCGCCAcguaguCCGUGcGCGGCCgcGGGGCCa -3' miRNA: 3'- -GUGGUagu---GGCACaUGCCGG--UCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 125784 | 0.74 | 0.452579 |
Target: 5'- gGCCAagGCCGcUGcgaacggggcUugGGCCGGGGCCg -3' miRNA: 3'- gUGGUagUGGC-AC----------AugCCGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 107375 | 0.75 | 0.443421 |
Target: 5'- gCGCCGgggCGcCCGcGUccacgaACGGCCAGAGCCc -3' miRNA: 3'- -GUGGUa--GU-GGCaCA------UGCCGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 64668 | 0.79 | 0.25228 |
Target: 5'- cCACuCGUCGCCGUgGUGCGGCaccgggcgcguccCGGGGCCg -3' miRNA: 3'- -GUG-GUAGUGGCA-CAUGCCG-------------GUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 98684 | 0.79 | 0.271678 |
Target: 5'- cCGCCGggGCCGgagGcGCGGCCGGAGCUg -3' miRNA: 3'- -GUGGUagUGGCa--CaUGCCGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 34523 | 0.78 | 0.284819 |
Target: 5'- gCACCuUCGCCGUG-ACGGCCcgcGAGCUc -3' miRNA: 3'- -GUGGuAGUGGCACaUGCCGGu--CUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 76046 | 0.77 | 0.312594 |
Target: 5'- gCGCCAUCAgCGUGgcCGGCgGGcGCCa -3' miRNA: 3'- -GUGGUAGUgGCACauGCCGgUCuCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 65257 | 0.77 | 0.350134 |
Target: 5'- cCACCGUCGCCGgGUuCaGCCGGuGCCg -3' miRNA: 3'- -GUGGUAGUGGCaCAuGcCGGUCuCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 1175 | 0.75 | 0.407867 |
Target: 5'- gGCCcgCGCC----GCGGCCGGGGCCg -3' miRNA: 3'- gUGGuaGUGGcacaUGCCGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 78206 | 0.75 | 0.434368 |
Target: 5'- aCGCCAgCGCCGUGgcUGGCCu--GCCg -3' miRNA: 3'- -GUGGUaGUGGCACauGCCGGucuCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 94179 | 0.75 | 0.443421 |
Target: 5'- cCACCAgcguggCGCgGUGcGCGGCCAGGaaguGCCg -3' miRNA: 3'- -GUGGUa-----GUGgCACaUGCCGGUCU----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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