Results 21 - 40 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23820 | 3' | -55.9 | NC_005261.1 | + | 75461 | 0.66 | 0.899913 |
Target: 5'- gGCCAguuccaggCGCCGggcgGCGGCgCGG-GCCg -3' miRNA: 3'- gUGGUa-------GUGGCaca-UGCCG-GUCuCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 19775 | 0.66 | 0.899913 |
Target: 5'- -cCCGUCGCCucgaacacGCGGCCcuccGAGCCg -3' miRNA: 3'- guGGUAGUGGcaca----UGCCGGu---CUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 52966 | 0.66 | 0.899913 |
Target: 5'- gCGCCG-CGCCG-GUGCGGCgccggcaggCGGGGgCg -3' miRNA: 3'- -GUGGUaGUGGCaCAUGCCG---------GUCUCgG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 20651 | 0.66 | 0.899913 |
Target: 5'- cCGCCcgCACCGccgGUgGCGGCagcggCAGAGUg -3' miRNA: 3'- -GUGGuaGUGGCa--CA-UGCCG-----GUCUCGg -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 23556 | 0.66 | 0.899913 |
Target: 5'- aGCCGUCGCag-GUGgGGC-AGGGCUg -3' miRNA: 3'- gUGGUAGUGgcaCAUgCCGgUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 125716 | 0.66 | 0.899913 |
Target: 5'- gGCCGcCGCgGgcu-CGGCUGGGGCCg -3' miRNA: 3'- gUGGUaGUGgCacauGCCGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 133208 | 0.66 | 0.899913 |
Target: 5'- uCGCCGaCGCCGUcgaGgcCGaGCUGGGGCCc -3' miRNA: 3'- -GUGGUaGUGGCA---CauGC-CGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 1401 | 0.66 | 0.893364 |
Target: 5'- gCGCCGcgGCCGcGgcgGCGGCgGGGGCg -3' miRNA: 3'- -GUGGUagUGGCaCa--UGCCGgUCUCGg -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 69499 | 0.66 | 0.893364 |
Target: 5'- gCACCuguaCGCCGgcgGCGggcuGCCGGAGCUg -3' miRNA: 3'- -GUGGua--GUGGCacaUGC----CGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 87785 | 0.66 | 0.893364 |
Target: 5'- uCACCGUCuuggccGCCGcGUccAUGGCCggcGGGGCUg -3' miRNA: 3'- -GUGGUAG------UGGCaCA--UGCCGG---UCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 53554 | 0.66 | 0.889324 |
Target: 5'- gGCCG-CGCCGcGgcccaggcgcacuaGCGGCCGcGGGCCg -3' miRNA: 3'- gUGGUaGUGGCaCa-------------UGCCGGU-CUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 110617 | 0.66 | 0.886585 |
Target: 5'- -----aCGCCGaGcUGCGGCUGGAGCCc -3' miRNA: 3'- gugguaGUGGCaC-AUGCCGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 101649 | 0.66 | 0.886585 |
Target: 5'- gCGCCG-CACCGUGcucagcaucUGCgccucguaGGCC-GAGCCg -3' miRNA: 3'- -GUGGUaGUGGCAC---------AUG--------CCGGuCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 16252 | 0.66 | 0.886585 |
Target: 5'- -uCCG-CGCCGgg-GCcGCCGGGGCCg -3' miRNA: 3'- guGGUaGUGGCacaUGcCGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 69299 | 0.66 | 0.886585 |
Target: 5'- gCGCgGggCGCCGgugGCGGCgGGAGCg -3' miRNA: 3'- -GUGgUa-GUGGCacaUGCCGgUCUCGg -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 80047 | 0.66 | 0.879579 |
Target: 5'- cCGCCGUCGCCacugGCGGCgGGcGCg -3' miRNA: 3'- -GUGGUAGUGGcacaUGCCGgUCuCGg -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 113061 | 0.66 | 0.879579 |
Target: 5'- cCACCGcUCGCUGggcauCGGCuucCAGGGCCu -3' miRNA: 3'- -GUGGU-AGUGGCacau-GCCG---GUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 115405 | 0.66 | 0.879579 |
Target: 5'- -gUCGUCgACCGcgGgcgGCaGCCGGGGCCg -3' miRNA: 3'- guGGUAG-UGGCa-Ca--UGcCGGUCUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 70642 | 0.66 | 0.879579 |
Target: 5'- gCGCCGcggCGCUGagGUucggcgccGCGGCCGcGGGCCg -3' miRNA: 3'- -GUGGUa--GUGGCa-CA--------UGCCGGU-CUCGG- -5' |
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23820 | 3' | -55.9 | NC_005261.1 | + | 13432 | 0.66 | 0.879579 |
Target: 5'- cCGCgCGUCgACCGgGUGCaggcaGGCCGGcGCCu -3' miRNA: 3'- -GUG-GUAG-UGGCaCAUG-----CCGGUCuCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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