miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 3' -55.9 NC_005261.1 + 19775 0.66 0.899913
Target:  5'- -cCCGUCGCCucgaacacGCGGCCcuccGAGCCg -3'
miRNA:   3'- guGGUAGUGGcaca----UGCCGGu---CUCGG- -5'
23820 3' -55.9 NC_005261.1 + 20014 0.69 0.779995
Target:  5'- gACCcgCAcCCGUccGCGGUCAGcgGGCCg -3'
miRNA:   3'- gUGGuaGU-GGCAcaUGCCGGUC--UCGG- -5'
23820 3' -55.9 NC_005261.1 + 20651 0.66 0.899913
Target:  5'- cCGCCcgCACCGccgGUgGCGGCagcggCAGAGUg -3'
miRNA:   3'- -GUGGuaGUGGCa--CA-UGCCG-----GUCUCGg -5'
23820 3' -55.9 NC_005261.1 + 23346 0.66 0.906228
Target:  5'- gGCgCAgcgCGCgCGUGU-CGGCCGugacaaacgccGAGCCg -3'
miRNA:   3'- gUG-GUa--GUG-GCACAuGCCGGU-----------CUCGG- -5'
23820 3' -55.9 NC_005261.1 + 23556 0.66 0.899913
Target:  5'- aGCCGUCGCag-GUGgGGC-AGGGCUg -3'
miRNA:   3'- gUGGUAGUGgcaCAUgCCGgUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 23616 0.67 0.864907
Target:  5'- cCGCCGcUGCCGggGcGCGGCgGGGGUCg -3'
miRNA:   3'- -GUGGUaGUGGCa-CaUGCCGgUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 29432 0.67 0.872352
Target:  5'- gGCCcgCgGCCGUGUuCGuGCCGGAGa- -3'
miRNA:   3'- gUGGuaG-UGGCACAuGC-CGGUCUCgg -5'
23820 3' -55.9 NC_005261.1 + 30977 0.66 0.906847
Target:  5'- gGCC--CGCCGcGgcgcaagcgcaaguCGGCCGGGGCCa -3'
miRNA:   3'- gUGGuaGUGGCaCau------------GCCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 31034 0.72 0.578444
Target:  5'- aGCCGgcgCGCCGccggGUccccagcGCGGCgGGAGCCg -3'
miRNA:   3'- gUGGUa--GUGGCa---CA-------UGCCGgUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 31335 0.68 0.807257
Target:  5'- cCGCCAgcgCGCCGcUGcgGCGGCgCGuGGCCu -3'
miRNA:   3'- -GUGGUa--GUGGC-ACa-UGCCG-GUcUCGG- -5'
23820 3' -55.9 NC_005261.1 + 33154 0.71 0.671655
Target:  5'- gUAgUGUCACCGcGcgGCGGCC-GAGCCg -3'
miRNA:   3'- -GUgGUAGUGGCaCa-UGCCGGuCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 33594 0.67 0.872352
Target:  5'- gCACCAggggcggCGCCGgcgcggGCGGC-GGGGCCc -3'
miRNA:   3'- -GUGGUa------GUGGCaca---UGCCGgUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 34523 0.78 0.284819
Target:  5'- gCACCuUCGCCGUG-ACGGCCcgcGAGCUc -3'
miRNA:   3'- -GUGGuAGUGGCACaUGCCGGu--CUCGG- -5'
23820 3' -55.9 NC_005261.1 + 37918 0.72 0.579461
Target:  5'- gCGCCAcCGCUGcgcgaGUACGagcGCCGGAGCCg -3'
miRNA:   3'- -GUGGUaGUGGCa----CAUGC---CGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 38539 0.69 0.779995
Target:  5'- gCGCCGggcacagCGCCGgcgcGCGGCCAugcggcggguuGAGCCa -3'
miRNA:   3'- -GUGGUa------GUGGCaca-UGCCGGU-----------CUCGG- -5'
23820 3' -55.9 NC_005261.1 + 38732 0.67 0.864907
Target:  5'- gCGCCcgCAgagcCCGggccCGcGCCAGAGCCg -3'
miRNA:   3'- -GUGGuaGU----GGCacauGC-CGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 38930 0.66 0.899913
Target:  5'- gCGCCAa-GCCG---GCGGCCGGgcgGGCCg -3'
miRNA:   3'- -GUGGUagUGGCacaUGCCGGUC---UCGG- -5'
23820 3' -55.9 NC_005261.1 + 39857 0.68 0.824647
Target:  5'- cCGCCGggCGCCcaGgcacACGGCCAGcaGGCCg -3'
miRNA:   3'- -GUGGUa-GUGGcaCa---UGCCGGUC--UCGG- -5'
23820 3' -55.9 NC_005261.1 + 40678 0.66 0.912307
Target:  5'- aCGCCGUCggggaGCCGgcgcCGGCCGG-GCUc -3'
miRNA:   3'- -GUGGUAG-----UGGCacauGCCGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 40744 0.68 0.816036
Target:  5'- -cCCAUCAgCGUGUAUGuGUCGGucugcaguGCCa -3'
miRNA:   3'- guGGUAGUgGCACAUGC-CGGUCu-------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.