miRNA display CGI


Results 41 - 60 of 572 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 5' -68.8 NC_005261.1 + 75985 0.66 0.367316
Target:  5'- cCGGgCGCgGCCGCCcucgcgcuggacgCCCUGGCGcCGc -3'
miRNA:   3'- cGCCgGCG-CGGCGG-------------GGGGCCGCuGCa -5'
23820 5' -68.8 NC_005261.1 + 31995 0.66 0.367316
Target:  5'- cGCGGugcCCGUGCCGCCgCgcgaguaCCGGCagcGCGUg -3'
miRNA:   3'- -CGCC---GGCGCGGCGGgG-------GGCCGc--UGCA- -5'
23820 5' -68.8 NC_005261.1 + 39464 0.66 0.367316
Target:  5'- cGCGGCgCgGCGCCccaacggGCCCgCCgCGGaCGAUGa -3'
miRNA:   3'- -CGCCG-G-CGCGG-------CGGG-GG-GCC-GCUGCa -5'
23820 5' -68.8 NC_005261.1 + 15980 0.66 0.36363
Target:  5'- -gGGcCCGgGCCGCUCaCCCGGgcagcgcgcuguaguUGACGUu -3'
miRNA:   3'- cgCC-GGCgCGGCGGG-GGGCC---------------GCUGCA- -5'
23820 5' -68.8 NC_005261.1 + 129583 0.66 0.36363
Target:  5'- gGCGGCCgcGCGCCGCgggacacgcggcaauUUCgCGGCGGgGUc -3'
miRNA:   3'- -CGCCGG--CGCGGCG---------------GGGgGCCGCUgCA- -5'
23820 5' -68.8 NC_005261.1 + 89837 0.66 0.3607
Target:  5'- cGCGGCCGgGCCGgagggCCgCGGCGucauCGg -3'
miRNA:   3'- -CGCCGGCgCGGCgg---GGgGCCGCu---GCa -5'
23820 5' -68.8 NC_005261.1 + 93911 0.66 0.3607
Target:  5'- uGCGGgCGCGgCGCCCgCgGGCuuGCGc -3'
miRNA:   3'- -CGCCgGCGCgGCGGGgGgCCGc-UGCa -5'
23820 5' -68.8 NC_005261.1 + 30170 0.66 0.3607
Target:  5'- cGCGcccGCCGCGCUGCgCgCCgaGGCGGCc- -3'
miRNA:   3'- -CGC---CGGCGCGGCGgG-GGg-CCGCUGca -5'
23820 5' -68.8 NC_005261.1 + 20563 0.66 0.3607
Target:  5'- gGCgGGCUGCGCaGCggCgCCGGCGGCGc -3'
miRNA:   3'- -CG-CCGGCGCGgCGg-GgGGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 64120 0.66 0.3607
Target:  5'- gGCGGCaCGUGCCGCgcggCCgCCaGCG-CGUc -3'
miRNA:   3'- -CGCCG-GCGCGGCG----GGgGGcCGCuGCA- -5'
23820 5' -68.8 NC_005261.1 + 68540 0.66 0.3607
Target:  5'- gGCGcCCGCG-CGCCCCCUGcuGCG-CGg -3'
miRNA:   3'- -CGCcGGCGCgGCGGGGGGC--CGCuGCa -5'
23820 5' -68.8 NC_005261.1 + 38919 0.66 0.3607
Target:  5'- cGCGGgcCCGCG-CGCCaagCCGGCGGCc- -3'
miRNA:   3'- -CGCC--GGCGCgGCGGgg-GGCCGCUGca -5'
23820 5' -68.8 NC_005261.1 + 3852 0.66 0.3607
Target:  5'- aGCGGCgccgGCGCCGCgCggCCGGCGAg-- -3'
miRNA:   3'- -CGCCGg---CGCGGCGgGg-GGCCGCUgca -5'
23820 5' -68.8 NC_005261.1 + 87492 0.66 0.3607
Target:  5'- cGCGGCCGUGCuggcgcgcaggCGCUCgCCGcCGugGa -3'
miRNA:   3'- -CGCCGGCGCG-----------GCGGGgGGCcGCugCa -5'
23820 5' -68.8 NC_005261.1 + 44229 0.66 0.3607
Target:  5'- cGCGcGCUGCugGCCGCCCagcgCgCGGcCGACGc -3'
miRNA:   3'- -CGC-CGGCG--CGGCGGGg---G-GCC-GCUGCa -5'
23820 5' -68.8 NC_005261.1 + 2369 0.66 0.3607
Target:  5'- -aGGCCacGCGCCGCCgCagCGGCG-CGc -3'
miRNA:   3'- cgCCGG--CGCGGCGGgGg-GCCGCuGCa -5'
23820 5' -68.8 NC_005261.1 + 116652 0.66 0.3607
Target:  5'- cGCGcGCC-CGCCGCCgaccugcuCCgCGGCGcCGg -3'
miRNA:   3'- -CGC-CGGcGCGGCGG--------GGgGCCGCuGCa -5'
23820 5' -68.8 NC_005261.1 + 12522 0.66 0.3607
Target:  5'- cGCGGggccCCGCGCCGCCgCCgaauuuauacgCGGgGGCc- -3'
miRNA:   3'- -CGCC----GGCGCGGCGGgGG-----------GCCgCUGca -5'
23820 5' -68.8 NC_005261.1 + 43577 0.66 0.3607
Target:  5'- aGCGGCgcuucgccgugCGCGaCGCCguCUCCGGCGAgGa -3'
miRNA:   3'- -CGCCG-----------GCGCgGCGG--GGGGCCGCUgCa -5'
23820 5' -68.8 NC_005261.1 + 49783 0.66 0.35997
Target:  5'- cGCGGacguCGCGCCagcgcgagacgucGCCCUCCGcGgGGCGc -3'
miRNA:   3'- -CGCCg---GCGCGG-------------CGGGGGGC-CgCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.