miRNA display CGI


Results 21 - 40 of 572 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 5' -68.8 NC_005261.1 + 42173 0.66 0.371027
Target:  5'- aGCGaGCCGUggacgcagggcgcgaGCCGCUCCaCGGCGcCGc -3'
miRNA:   3'- -CGC-CGGCG---------------CGGCGGGGgGCCGCuGCa -5'
23820 5' -68.8 NC_005261.1 + 101153 0.66 0.368056
Target:  5'- cGCGGCggCGCGCCGCCgcgaagagcUCCCacGCGcCGUc -3'
miRNA:   3'- -CGCCG--GCGCGGCGG---------GGGGc-CGCuGCA- -5'
23820 5' -68.8 NC_005261.1 + 129349 0.66 0.368056
Target:  5'- cGCGGuaGCGCCcCCUUCCGcGCG-CGg -3'
miRNA:   3'- -CGCCggCGCGGcGGGGGGC-CGCuGCa -5'
23820 5' -68.8 NC_005261.1 + 115495 0.66 0.368056
Target:  5'- cGCGGCggCGCGCCGCagCCCCCGcaccaccuGCuGCa- -3'
miRNA:   3'- -CGCCG--GCGCGGCG--GGGGGC--------CGcUGca -5'
23820 5' -68.8 NC_005261.1 + 73123 0.66 0.368056
Target:  5'- cGCGuCCGCGCgGUCCCCgGGCc---- -3'
miRNA:   3'- -CGCcGGCGCGgCGGGGGgCCGcugca -5'
23820 5' -68.8 NC_005261.1 + 15176 0.66 0.368056
Target:  5'- aGCGGCgGCGgCGCCCgCgGGaaACGc -3'
miRNA:   3'- -CGCCGgCGCgGCGGGgGgCCgcUGCa -5'
23820 5' -68.8 NC_005261.1 + 124751 0.66 0.368056
Target:  5'- cGCaGCCGCagcgGCCGCCUCCaGGCuGAgGa -3'
miRNA:   3'- -CGcCGGCG----CGGCGGGGGgCCG-CUgCa -5'
23820 5' -68.8 NC_005261.1 + 21766 0.66 0.368056
Target:  5'- cGCGcGCCGgGCgaGCCgCCgCGGCG-CGg -3'
miRNA:   3'- -CGC-CGGCgCGg-CGG-GGgGCCGCuGCa -5'
23820 5' -68.8 NC_005261.1 + 21839 0.66 0.368056
Target:  5'- uGCGGgCGgGCuCGCCCCgCaGCuGACGc -3'
miRNA:   3'- -CGCCgGCgCG-GCGGGGgGcCG-CUGCa -5'
23820 5' -68.8 NC_005261.1 + 54582 0.66 0.368056
Target:  5'- uCGGCCaGCGCCGaCUgCgCGGUGAgCGUc -3'
miRNA:   3'- cGCCGG-CGCGGC-GGgGgGCCGCU-GCA- -5'
23820 5' -68.8 NC_005261.1 + 117641 0.66 0.368056
Target:  5'- -gGGcCCGCGCCgcGCCCCCCcGCuaaGCGc -3'
miRNA:   3'- cgCC-GGCGCGG--CGGGGGGcCGc--UGCa -5'
23820 5' -68.8 NC_005261.1 + 101833 0.66 0.368056
Target:  5'- cGCGGCUGaucuccgcCGCgCGCCCgCCGGCcGCc- -3'
miRNA:   3'- -CGCCGGC--------GCG-GCGGGgGGCCGcUGca -5'
23820 5' -68.8 NC_005261.1 + 54791 0.66 0.368056
Target:  5'- gGCGcGCCcCGCCGCCUCCgCGuaGGCc- -3'
miRNA:   3'- -CGC-CGGcGCGGCGGGGG-GCcgCUGca -5'
23820 5' -68.8 NC_005261.1 + 66356 0.66 0.368056
Target:  5'- uUGGCCaGCGCgagcuCGCgCCCCGGCGcCc- -3'
miRNA:   3'- cGCCGG-CGCG-----GCGgGGGGCCGCuGca -5'
23820 5' -68.8 NC_005261.1 + 104258 0.66 0.368056
Target:  5'- cGCGcGCgaGCGCCGCggUCUCGGCGGCu- -3'
miRNA:   3'- -CGC-CGg-CGCGGCGg-GGGGCCGCUGca -5'
23820 5' -68.8 NC_005261.1 + 61270 0.66 0.368056
Target:  5'- cGgGGCCGUGCCcauGCCCgCCGa-GACGc -3'
miRNA:   3'- -CgCCGGCGCGG---CGGGgGGCcgCUGCa -5'
23820 5' -68.8 NC_005261.1 + 29768 0.66 0.368056
Target:  5'- uGCGGCgCGCGUacgCGCCCauggccuaCCCGGaggcCGGCGc -3'
miRNA:   3'- -CGCCG-GCGCG---GCGGG--------GGGCC----GCUGCa -5'
23820 5' -68.8 NC_005261.1 + 135749 0.66 0.368056
Target:  5'- cGCGccucaGCCGCGCggUGCgCUCCGGCGcagagcGCGUg -3'
miRNA:   3'- -CGC-----CGGCGCG--GCGgGGGGCCGC------UGCA- -5'
23820 5' -68.8 NC_005261.1 + 102764 0.66 0.368056
Target:  5'- cGCGGacgcgagCGCGCCcgagGCCucgCCCCGGCcGCGa -3'
miRNA:   3'- -CGCCg------GCGCGG----CGG---GGGGCCGcUGCa -5'
23820 5' -68.8 NC_005261.1 + 52431 0.66 0.367316
Target:  5'- gGCGuCCGCGUCcaggGCCacgagguCCCCGGCGcGCGUc -3'
miRNA:   3'- -CGCcGGCGCGG----CGG-------GGGGCCGC-UGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.