miRNA display CGI


Results 21 - 40 of 572 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 5' -68.8 NC_005261.1 + 117732 0.77 0.060694
Target:  5'- aGCGGCCGCgcgcuggcgccGCCGCCCCCaacGCGACu- -3'
miRNA:   3'- -CGCCGGCG-----------CGGCGGGGGgc-CGCUGca -5'
23820 5' -68.8 NC_005261.1 + 77037 0.77 0.060694
Target:  5'- -aGGCCGCGCgCGCggCCCUCGGCGACc- -3'
miRNA:   3'- cgCCGGCGCG-GCG--GGGGGCCGCUGca -5'
23820 5' -68.8 NC_005261.1 + 21198 0.77 0.063771
Target:  5'- cGCGGCCGCGgaCGCUggCCCCGGCcgcGACGg -3'
miRNA:   3'- -CGCCGGCGCg-GCGG--GGGGCCG---CUGCa -5'
23820 5' -68.8 NC_005261.1 + 75133 0.77 0.065366
Target:  5'- cCGGCUGauCGCCgagcGCCCCCUGGCGACGc -3'
miRNA:   3'- cGCCGGC--GCGG----CGGGGGGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 11026 0.76 0.068671
Target:  5'- cGUcGCCGgGcCCGUCCCCCGGCGGCa- -3'
miRNA:   3'- -CGcCGGCgC-GGCGGGGGGCCGCUGca -5'
23820 5' -68.8 NC_005261.1 + 110160 0.76 0.068671
Target:  5'- aUGGCCGcCGCCaccgcGCCCCCCGgGCGGCa- -3'
miRNA:   3'- cGCCGGC-GCGG-----CGGGGGGC-CGCUGca -5'
23820 5' -68.8 NC_005261.1 + 107825 0.76 0.072136
Target:  5'- aGCGGCCGcCGCCGCCUcugCCCGGuCGcCGc -3'
miRNA:   3'- -CGCCGGC-GCGGCGGG---GGGCC-GCuGCa -5'
23820 5' -68.8 NC_005261.1 + 14984 0.76 0.073931
Target:  5'- cGCGGCCGCGCCgGCCgCgCCCGGagcGCGg -3'
miRNA:   3'- -CGCCGGCGCGG-CGG-G-GGGCCgc-UGCa -5'
23820 5' -68.8 NC_005261.1 + 2508 0.76 0.075769
Target:  5'- cGCGaGCCGCGCCGCgaCCUCGG-GGCGg -3'
miRNA:   3'- -CGC-CGGCGCGGCGg-GGGGCCgCUGCa -5'
23820 5' -68.8 NC_005261.1 + 4940 0.76 0.075769
Target:  5'- aGCGcCCGCGCCGCggcccaggcgCCCCCGGCcGCGg -3'
miRNA:   3'- -CGCcGGCGCGGCG----------GGGGGCCGcUGCa -5'
23820 5' -68.8 NC_005261.1 + 88825 0.76 0.077651
Target:  5'- gGCGGCgGCGCgCGCCggCCCGGCGuCGg -3'
miRNA:   3'- -CGCCGgCGCG-GCGGg-GGGCCGCuGCa -5'
23820 5' -68.8 NC_005261.1 + 84424 0.76 0.077651
Target:  5'- uCGGCCGCGCCcuccggcgaccaGCCCCCgGGCcGCGc -3'
miRNA:   3'- cGCCGGCGCGG------------CGGGGGgCCGcUGCa -5'
23820 5' -68.8 NC_005261.1 + 46261 0.76 0.077651
Target:  5'- gGCGGCCGCGaCCGUgUCCCCGG-GGCGc -3'
miRNA:   3'- -CGCCGGCGC-GGCG-GGGGGCCgCUGCa -5'
23820 5' -68.8 NC_005261.1 + 39356 0.76 0.079578
Target:  5'- cGCGGCgGCaGCCGCCUCaUCGGCGGCc- -3'
miRNA:   3'- -CGCCGgCG-CGGCGGGG-GGCCGCUGca -5'
23820 5' -68.8 NC_005261.1 + 63010 0.75 0.081351
Target:  5'- gGCGGCCGCGCCcgcgcgggcgccgGCgCCCgCGGCGAgGc -3'
miRNA:   3'- -CGCCGGCGCGG-------------CG-GGGgGCCGCUgCa -5'
23820 5' -68.8 NC_005261.1 + 2397 0.75 0.08155
Target:  5'- gGCGGCgagCGCGCCcgcggGCCCCgCgCGGCGGCGg -3'
miRNA:   3'- -CGCCG---GCGCGG-----CGGGG-G-GCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 66448 0.75 0.083569
Target:  5'- cGCGGCgCGCGCCGCCgguCCCgccaGGCGcGCGUc -3'
miRNA:   3'- -CGCCG-GCGCGGCGG---GGGg---CCGC-UGCA- -5'
23820 5' -68.8 NC_005261.1 + 83588 0.75 0.083569
Target:  5'- cGCGGCCgccagcagcGCGUCGCUCUCCGccGCGGCGUg -3'
miRNA:   3'- -CGCCGG---------CGCGGCGGGGGGC--CGCUGCA- -5'
23820 5' -68.8 NC_005261.1 + 37753 0.75 0.085635
Target:  5'- cGCGggcGCCGCGCCGCCCaagcgCCGGCGccccaACGg -3'
miRNA:   3'- -CGC---CGGCGCGGCGGGg----GGCCGC-----UGCa -5'
23820 5' -68.8 NC_005261.1 + 62221 0.75 0.085635
Target:  5'- cGCGGCCGCGUcugCGCCCUCgCGGUGcugcACGUc -3'
miRNA:   3'- -CGCCGGCGCG---GCGGGGG-GCCGC----UGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.