Results 1 - 20 of 572 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23820 | 5' | -68.8 | NC_005261.1 | + | 108890 | 0.86 | 0.012772 |
Target: 5'- aCGGCCGCGCUGCCCgCCGGCGAgCGg -3' miRNA: 3'- cGCCGGCGCGGCGGGgGGCCGCU-GCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 80133 | 0.84 | 0.018677 |
Target: 5'- aGCGGCgGCGCCGCUaCCaCCGGCGGCGa -3' miRNA: 3'- -CGCCGgCGCGGCGG-GG-GGCCGCUGCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 135063 | 0.84 | 0.019155 |
Target: 5'- aGCGGCC-CGCCGCUUUCCGGCGGCGg -3' miRNA: 3'- -CGCCGGcGCGGCGGGGGGCCGCUGCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 43860 | 0.82 | 0.027275 |
Target: 5'- cGCGGCCGCGUCG-UCCUCGGCGGCGc -3' miRNA: 3'- -CGCCGGCGCGGCgGGGGGCCGCUGCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 642 | 0.8 | 0.034201 |
Target: 5'- gGCGGCCgccaGCGCCGCgUCCCCGGCGcCGa -3' miRNA: 3'- -CGCCGG----CGCGGCG-GGGGGCCGCuGCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 54492 | 0.8 | 0.034201 |
Target: 5'- gGCGGCagGCGCaaacgcaggCGCCCUCCGGCGACGg -3' miRNA: 3'- -CGCCGg-CGCG---------GCGGGGGGCCGCUGCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 104440 | 0.8 | 0.035961 |
Target: 5'- aGCGGgcCCGCGUCGCCgCCgCCGGCGGCGc -3' miRNA: 3'- -CGCC--GGCGCGGCGG-GG-GGCCGCUGCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 14533 | 0.8 | 0.036874 |
Target: 5'- gGCGGUgGCGCgGCCgCCCGGCGACc- -3' miRNA: 3'- -CGCCGgCGCGgCGGgGGGCCGCUGca -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 100723 | 0.79 | 0.040758 |
Target: 5'- cGCGGCCGCGCCGCgCgCgCGcGCGGCGg -3' miRNA: 3'- -CGCCGGCGCGGCGgG-GgGC-CGCUGCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 127680 | 0.79 | 0.043931 |
Target: 5'- aCGGCgGCgGCCGCUgCCCCGGCGGCGc -3' miRNA: 3'- cGCCGgCG-CGGCGG-GGGGCCGCUGCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 42818 | 0.79 | 0.047345 |
Target: 5'- cGCGGCCGCGCCgGCCggagcaCCUgGGCGAUGg -3' miRNA: 3'- -CGCCGGCGCGG-CGG------GGGgCCGCUGCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 130472 | 0.79 | 0.047345 |
Target: 5'- aGCGGCuCGCGgCGUgCCUCGGCGGCGa -3' miRNA: 3'- -CGCCG-GCGCgGCGgGGGGCCGCUGCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 74458 | 0.78 | 0.049763 |
Target: 5'- gGUGGggGCGCCGCCCCCgGcGCGGCGUg -3' miRNA: 3'- -CGCCggCGCGGCGGGGGgC-CGCUGCA- -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 47394 | 0.78 | 0.049763 |
Target: 5'- cGgGGCgGCGCCGCCCCCCGuGCacacGCGg -3' miRNA: 3'- -CgCCGgCGCGGCGGGGGGC-CGc---UGCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 334 | 0.78 | 0.050638 |
Target: 5'- gGCGGCUGCgGCgGCCCgcagcccggcgcggCCCGGCGGCGg -3' miRNA: 3'- -CGCCGGCG-CGgCGGG--------------GGGCCGCUGCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 138005 | 0.78 | 0.050638 |
Target: 5'- gGCGGCUGCgGCgGCCCgcagcccggcgcggCCCGGCGGCGg -3' miRNA: 3'- -CGCCGGCG-CGgCGGG--------------GGGCCGCUGCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 131558 | 0.78 | 0.051017 |
Target: 5'- gGCGGUCGCcgucgcccgGCUGCCCCCCG-CGACGg -3' miRNA: 3'- -CGCCGGCG---------CGGCGGGGGGCcGCUGCa -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 107163 | 0.78 | 0.052301 |
Target: 5'- gGCGGCCaGCGCCuCCgUCUCGGCGGCGUa -3' miRNA: 3'- -CGCCGG-CGCGGcGG-GGGGCCGCUGCA- -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 39417 | 0.78 | 0.053617 |
Target: 5'- aGCGGCCaCcCCGUCCCCCGGCG-CGUc -3' miRNA: 3'- -CGCCGGcGcGGCGGGGGGCCGCuGCA- -5' |
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23820 | 5' | -68.8 | NC_005261.1 | + | 98301 | 0.77 | 0.057761 |
Target: 5'- cGCGGCCucgggggcggGCGCCGCCgCCagCGGCGGCGc -3' miRNA: 3'- -CGCCGG----------CGCGGCGG-GGg-GCCGCUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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