miRNA display CGI


Results 1 - 20 of 572 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 5' -68.8 NC_005261.1 + 107 0.72 0.14192
Target:  5'- -gGGCCcCGCCGCCCgCgCCGGCGcCGc -3'
miRNA:   3'- cgCCGGcGCGGCGGG-G-GGCCGCuGCa -5'
23820 5' -68.8 NC_005261.1 + 204 0.68 0.268676
Target:  5'- aGCGguGCCGcCGCCG-CCCCUGGUGcucGCGg -3'
miRNA:   3'- -CGC--CGGC-GCGGCgGGGGGCCGC---UGCa -5'
23820 5' -68.8 NC_005261.1 + 262 0.69 0.240725
Target:  5'- gGCGGCUGCGgCGgCggCUgCGGCGGCGg -3'
miRNA:   3'- -CGCCGGCGCgGCgG--GGgGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 298 0.69 0.240725
Target:  5'- gGCGGCUGCGgCGgCggCUgCGGCGGCGg -3'
miRNA:   3'- -CGCCGGCGCgGCgG--GGgGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 334 0.78 0.050638
Target:  5'- gGCGGCUGCgGCgGCCCgcagcccggcgcggCCCGGCGGCGg -3'
miRNA:   3'- -CGCCGGCG-CGgCGGG--------------GGGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 553 0.7 0.187748
Target:  5'- gGCGGCuCG-GCCGCCgCgCGGUGACa- -3'
miRNA:   3'- -CGCCG-GCgCGGCGGgGgGCCGCUGca -5'
23820 5' -68.8 NC_005261.1 + 642 0.8 0.034201
Target:  5'- gGCGGCCgccaGCGCCGCgUCCCCGGCGcCGa -3'
miRNA:   3'- -CGCCGG----CGCGGCG-GGGGGCCGCuGCa -5'
23820 5' -68.8 NC_005261.1 + 1389 0.69 0.229728
Target:  5'- -aGGCCacgccggGCGCCGCggCCgCGGCGGCGg -3'
miRNA:   3'- cgCCGG-------CGCGGCGg-GGgGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 1423 0.71 0.163395
Target:  5'- gGgGGCgGCGcCCGCCUCCagcaccagCGGCGGCGc -3'
miRNA:   3'- -CgCCGgCGC-GGCGGGGG--------GCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 1480 0.68 0.251603
Target:  5'- cGCGGCCGCGCagaagGCCaCCgCC-GCGGCc- -3'
miRNA:   3'- -CGCCGGCGCGg----CGG-GG-GGcCGCUGca -5'
23820 5' -68.8 NC_005261.1 + 1571 0.74 0.109144
Target:  5'- aGCGG-CGCGCCgaGCCCCCagcgguuGGCGGCGc -3'
miRNA:   3'- -CGCCgGCGCGG--CGGGGGg------CCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 1608 0.66 0.375514
Target:  5'- gGCuGGCCGCcUCGCCCUCC-GCGAaGUc -3'
miRNA:   3'- -CG-CCGGCGcGGCGGGGGGcCGCUgCA- -5'
23820 5' -68.8 NC_005261.1 + 1694 0.71 0.179294
Target:  5'- cGCGGCagcaCGCGCUGCCgguaCUCGcGCGGCGg -3'
miRNA:   3'- -CGCCG----GCGCGGCGGg---GGGC-CGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 1802 0.66 0.375514
Target:  5'- aGCGGCgGCGCCccgggguagaGCCgcgcguaagcggCCUCGGCGcGCGc -3'
miRNA:   3'- -CGCCGgCGCGG----------CGG------------GGGGCCGC-UGCa -5'
23820 5' -68.8 NC_005261.1 + 2147 0.66 0.353448
Target:  5'- cCGGCgCGC-CCGUCCaggaCCCGGCccaGGCGUg -3'
miRNA:   3'- cGCCG-GCGcGGCGGG----GGGCCG---CUGCA- -5'
23820 5' -68.8 NC_005261.1 + 2283 0.69 0.224641
Target:  5'- -gGGCgGCGCCGCCagcgccuCCCCgGGCaGCGg -3'
miRNA:   3'- cgCCGgCGCGGCGG-------GGGG-CCGcUGCa -5'
23820 5' -68.8 NC_005261.1 + 2369 0.66 0.3607
Target:  5'- -aGGCCacGCGCCGCCgCagCGGCG-CGc -3'
miRNA:   3'- cgCCGG--CGCGGCGGgGg-GCCGCuGCa -5'
23820 5' -68.8 NC_005261.1 + 2397 0.75 0.08155
Target:  5'- gGCGGCgagCGCGCCcgcggGCCCCgCgCGGCGGCGg -3'
miRNA:   3'- -CGCCG---GCGCGG-----CGGGG-G-GCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 2508 0.76 0.075769
Target:  5'- cGCGaGCCGCGCCGCgaCCUCGG-GGCGg -3'
miRNA:   3'- -CGC-CGGCGCGGCGg-GGGGCCgCUGCa -5'
23820 5' -68.8 NC_005261.1 + 2587 0.68 0.25105
Target:  5'- gGCGGCaCGCggcggaaGCCG-CCgUCGGCGGCGg -3'
miRNA:   3'- -CGCCG-GCG-------CGGCgGGgGGCCGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.