miRNA display CGI


Results 1 - 20 of 572 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 5' -68.8 NC_005261.1 + 127319 0.65 0.382313
Target:  5'- uGgGGCCcUGCCGCCCgcgggggCCgGaGCGGCGg -3'
miRNA:   3'- -CgCCGGcGCGGCGGG-------GGgC-CGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 74458 0.78 0.049763
Target:  5'- gGUGGggGCGCCGCCCCCgGcGCGGCGUg -3'
miRNA:   3'- -CGCCggCGCGGCGGGGGgC-CGCUGCA- -5'
23820 5' -68.8 NC_005261.1 + 47394 0.78 0.049763
Target:  5'- cGgGGCgGCGCCGCCCCCCGuGCacacGCGg -3'
miRNA:   3'- -CgCCGgCGCGGCGGGGGGC-CGc---UGCa -5'
23820 5' -68.8 NC_005261.1 + 334 0.78 0.050638
Target:  5'- gGCGGCUGCgGCgGCCCgcagcccggcgcggCCCGGCGGCGg -3'
miRNA:   3'- -CGCCGGCG-CGgCGGG--------------GGGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 138005 0.78 0.050638
Target:  5'- gGCGGCUGCgGCgGCCCgcagcccggcgcggCCCGGCGGCGg -3'
miRNA:   3'- -CGCCGGCG-CGgCGGG--------------GGGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 131558 0.78 0.051017
Target:  5'- gGCGGUCGCcgucgcccgGCUGCCCCCCG-CGACGg -3'
miRNA:   3'- -CGCCGGCG---------CGGCGGGGGGCcGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 107163 0.78 0.052301
Target:  5'- gGCGGCCaGCGCCuCCgUCUCGGCGGCGUa -3'
miRNA:   3'- -CGCCGG-CGCGGcGG-GGGGCCGCUGCA- -5'
23820 5' -68.8 NC_005261.1 + 39417 0.78 0.053617
Target:  5'- aGCGGCCaCcCCGUCCCCCGGCG-CGUc -3'
miRNA:   3'- -CGCCGGcGcGGCGGGGGGCCGCuGCA- -5'
23820 5' -68.8 NC_005261.1 + 98301 0.77 0.057761
Target:  5'- cGCGGCCucgggggcggGCGCCGCCgCCagCGGCGGCGc -3'
miRNA:   3'- -CGCCGG----------CGCGGCGG-GGg-GCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 42818 0.79 0.047345
Target:  5'- cGCGGCCGCGCCgGCCggagcaCCUgGGCGAUGg -3'
miRNA:   3'- -CGCCGGCGCGG-CGG------GGGgCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 130472 0.79 0.047345
Target:  5'- aGCGGCuCGCGgCGUgCCUCGGCGGCGa -3'
miRNA:   3'- -CGCCG-GCGCgGCGgGGGGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 127680 0.79 0.043931
Target:  5'- aCGGCgGCgGCCGCUgCCCCGGCGGCGc -3'
miRNA:   3'- cGCCGgCG-CGGCGG-GGGGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 80133 0.84 0.018677
Target:  5'- aGCGGCgGCGCCGCUaCCaCCGGCGGCGa -3'
miRNA:   3'- -CGCCGgCGCGGCGG-GG-GGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 135063 0.84 0.019155
Target:  5'- aGCGGCC-CGCCGCUUUCCGGCGGCGg -3'
miRNA:   3'- -CGCCGGcGCGGCGGGGGGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 43860 0.82 0.027275
Target:  5'- cGCGGCCGCGUCG-UCCUCGGCGGCGc -3'
miRNA:   3'- -CGCCGGCGCGGCgGGGGGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 54492 0.8 0.034201
Target:  5'- gGCGGCagGCGCaaacgcaggCGCCCUCCGGCGACGg -3'
miRNA:   3'- -CGCCGg-CGCG---------GCGGGGGGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 642 0.8 0.034201
Target:  5'- gGCGGCCgccaGCGCCGCgUCCCCGGCGcCGa -3'
miRNA:   3'- -CGCCGG----CGCGGCG-GGGGGCCGCuGCa -5'
23820 5' -68.8 NC_005261.1 + 104440 0.8 0.035961
Target:  5'- aGCGGgcCCGCGUCGCCgCCgCCGGCGGCGc -3'
miRNA:   3'- -CGCC--GGCGCGGCGG-GG-GGCCGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 14533 0.8 0.036874
Target:  5'- gGCGGUgGCGCgGCCgCCCGGCGACc- -3'
miRNA:   3'- -CGCCGgCGCGgCGGgGGGCCGCUGca -5'
23820 5' -68.8 NC_005261.1 + 100723 0.79 0.040758
Target:  5'- cGCGGCCGCGCCGCgCgCgCGcGCGGCGg -3'
miRNA:   3'- -CGCCGGCGCGGCGgG-GgGC-CGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.