miRNA display CGI


Results 1 - 20 of 572 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 5' -68.8 NC_005261.1 + 127319 0.65 0.382313
Target:  5'- uGgGGCCcUGCCGCCCgcgggggCCgGaGCGGCGg -3'
miRNA:   3'- -CgCCGGcGCGGCGGG-------GGgC-CGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 97921 0.65 0.382313
Target:  5'- gGCGuccCCGCuguacugGCCGCCagCUCCGGCGGCa- -3'
miRNA:   3'- -CGCc--GGCG-------CGGCGG--GGGGCCGCUGca -5'
23820 5' -68.8 NC_005261.1 + 126525 0.66 0.339254
Target:  5'- gGCGcCCGCGcCCGCCgcgCCUCGGCcACGc -3'
miRNA:   3'- -CGCcGGCGC-GGCGG---GGGGCCGcUGCa -5'
23820 5' -68.8 NC_005261.1 + 59668 0.66 0.346299
Target:  5'- uGCGGCCGgGUCGUcgaagccgCCCUCGGCcagcACGc -3'
miRNA:   3'- -CGCCGGCgCGGCG--------GGGGGCCGc---UGCa -5'
23820 5' -68.8 NC_005261.1 + 39977 0.66 0.346299
Target:  5'- aGCgGGuuGCGCgCGCCg-CCGGCGuGCGUg -3'
miRNA:   3'- -CG-CCggCGCG-GCGGggGGCCGC-UGCA- -5'
23820 5' -68.8 NC_005261.1 + 70055 0.66 0.339254
Target:  5'- cGUGGCaccCGCGaCCaGCgCCCCGGCcaccgaagcccaGACGUa -3'
miRNA:   3'- -CGCCG---GCGC-GG-CGgGGGGCCG------------CUGCA- -5'
23820 5' -68.8 NC_005261.1 + 131817 0.66 0.339254
Target:  5'- aCGG-CGCGCCGCCgCuuGacGCGGCGc -3'
miRNA:   3'- cGCCgGCGCGGCGGgGggC--CGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 63731 0.66 0.346299
Target:  5'- aGCGGCgUGCGCauggCCgCGGCGGCGUa -3'
miRNA:   3'- -CGCCG-GCGCGgcggGGgGCCGCUGCA- -5'
23820 5' -68.8 NC_005261.1 + 72714 0.66 0.339254
Target:  5'- aGCGucgcGCC-CGCCGCCCCguCCGcGCGGgCGg -3'
miRNA:   3'- -CGC----CGGcGCGGCGGGG--GGC-CGCU-GCa -5'
23820 5' -68.8 NC_005261.1 + 5250 0.66 0.346299
Target:  5'- cGUGGCCG-GCUcguGCCCgCCGGgaGACGc -3'
miRNA:   3'- -CGCCGGCgCGG---CGGGgGGCCg-CUGCa -5'
23820 5' -68.8 NC_005261.1 + 93478 0.66 0.346299
Target:  5'- cGgGGCgCGCGUCGCCCg-CGGCGAa-- -3'
miRNA:   3'- -CgCCG-GCGCGGCGGGggGCCGCUgca -5'
23820 5' -68.8 NC_005261.1 + 19067 0.66 0.339254
Target:  5'- -gGGCUGCGCgG-CUCUCGGCG-CGUg -3'
miRNA:   3'- cgCCGGCGCGgCgGGGGGCCGCuGCA- -5'
23820 5' -68.8 NC_005261.1 + 103739 0.66 0.339254
Target:  5'- uUGGCgGCGgCGCCCUCCGccuGCGccuCGUg -3'
miRNA:   3'- cGCCGgCGCgGCGGGGGGC---CGCu--GCA- -5'
23820 5' -68.8 NC_005261.1 + 100131 0.66 0.339254
Target:  5'- cCGGCCGCaGCC-CCCgCUCGGCcaGCGa -3'
miRNA:   3'- cGCCGGCG-CGGcGGG-GGGCCGc-UGCa -5'
23820 5' -68.8 NC_005261.1 + 90791 0.66 0.34206
Target:  5'- gGCGGCCgGCGCgCGCUaCCgcgugcgcuggucuaCGGCGACa- -3'
miRNA:   3'- -CGCCGG-CGCG-GCGGgGG---------------GCCGCUGca -5'
23820 5' -68.8 NC_005261.1 + 36938 0.66 0.346299
Target:  5'- cGgGGCCcuGCGCUggcgcaagGCCCgCCGcGCGGCGc -3'
miRNA:   3'- -CgCCGG--CGCGG--------CGGGgGGC-CGCUGCa -5'
23820 5' -68.8 NC_005261.1 + 103000 0.66 0.339254
Target:  5'- gGCGGCCGC-CaCGCgCUCCGcGUGGCu- -3'
miRNA:   3'- -CGCCGGCGcG-GCGgGGGGC-CGCUGca -5'
23820 5' -68.8 NC_005261.1 + 101637 0.66 0.339254
Target:  5'- cGCGGCCGCGUCGCgCCgCaCCGugcucagcaucuGCGccuCGUa -3'
miRNA:   3'- -CGCCGGCGCGGCG-GG-G-GGC------------CGCu--GCA- -5'
23820 5' -68.8 NC_005261.1 + 93530 0.66 0.339254
Target:  5'- cGCGaggaagcccGCgCGCGCCGCCCaguagCGGuCGACGg -3'
miRNA:   3'- -CGC---------CG-GCGCGGCGGGgg---GCC-GCUGCa -5'
23820 5' -68.8 NC_005261.1 + 88860 0.66 0.344175
Target:  5'- -gGGCCGCGCCucgcgggacaGCCuCUCCGuugcggugguuagcGCGGCGg -3'
miRNA:   3'- cgCCGGCGCGG----------CGG-GGGGC--------------CGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.