Results 21 - 40 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23821 | 3' | -66.7 | NC_005261.1 | + | 60842 | 0.66 | 0.398887 |
Target: 5'- -cGGCGgcgGCGAGgUCGcGCGCcgggccgagCCCGCg -3' miRNA: 3'- gaCCGCa--CGCUCgGGC-CGCG---------GGGCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 71085 | 0.66 | 0.388555 |
Target: 5'- -gGGCGUcCGGGCCCgagaaggcguacacGGCGCgcagcuugcgCCCGCg -3' miRNA: 3'- gaCCGCAcGCUCGGG--------------CCGCG----------GGGCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 125294 | 0.66 | 0.406954 |
Target: 5'- -aGGCc-GCGGGCgCCggacccgcgGGCGCUCCGCg -3' miRNA: 3'- gaCCGcaCGCUCG-GG---------CCGCGGGGCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 15369 | 0.66 | 0.406954 |
Target: 5'- -cGGCG-GC--GCUCGGCGCCCUcgGCg -3' miRNA: 3'- gaCCGCaCGcuCGGGCCGCGGGG--CGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 30221 | 0.66 | 0.406954 |
Target: 5'- gCUGGCGgcGCGAa-CCGuG-GCCCCGCUg -3' miRNA: 3'- -GACCGCa-CGCUcgGGC-CgCGGGGCGA- -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 12065 | 0.66 | 0.383064 |
Target: 5'- -cGGCgGUGCG-GCagCGGCGUCCgCGCc -3' miRNA: 3'- gaCCG-CACGCuCGg-GCCGCGGG-GCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 51402 | 0.66 | 0.406954 |
Target: 5'- --cGCGaGCgGAGCCCGcGCGCCcaCCGCc -3' miRNA: 3'- gacCGCaCG-CUCGGGC-CGCGG--GGCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 31761 | 0.66 | 0.406954 |
Target: 5'- -aGGCGcacguguaccUGCGcGCCgCGGUGCugCCCGCg -3' miRNA: 3'- gaCCGC----------ACGCuCGG-GCCGCG--GGGCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 102889 | 0.66 | 0.390924 |
Target: 5'- -gGGCG-G-GAGCCCcGCGCCCCugGCc -3' miRNA: 3'- gaCCGCaCgCUCGGGcCGCGGGG--CGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 86979 | 0.66 | 0.406954 |
Target: 5'- -cGGCG-GC-AGCaCGGCGCCCuCGUg -3' miRNA: 3'- gaCCGCaCGcUCGgGCCGCGGG-GCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 15785 | 0.66 | 0.406954 |
Target: 5'- gCUGGCGgGCGccGCCCGcGCGgCCaGCg -3' miRNA: 3'- -GACCGCaCGCu-CGGGC-CGCgGGgCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 54240 | 0.66 | 0.426726 |
Target: 5'- -cGGCGcgcgcucaugugcaGCGcGCCCuGGCGCCgCGCa -3' miRNA: 3'- gaCCGCa-------------CGCuCGGG-CCGCGGgGCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 93413 | 0.66 | 0.415123 |
Target: 5'- -cGuCGUGC--GCCC-GCGCCCCGCg -3' miRNA: 3'- gaCcGCACGcuCGGGcCGCGGGGCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 81428 | 0.66 | 0.390924 |
Target: 5'- -aGGCG-GCGucgUCGGcCGCCCCGCg -3' miRNA: 3'- gaCCGCaCGCucgGGCC-GCGGGGCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 4293 | 0.66 | 0.383064 |
Target: 5'- -cGGCc-GCGGGCCCcGCGgCCgCCGCg -3' miRNA: 3'- gaCCGcaCGCUCGGGcCGC-GG-GGCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 107815 | 0.66 | 0.388555 |
Target: 5'- -cGGCGgcccuaGCGGccgccgccgccucuGCCCGGuCGCCgCCGCc -3' miRNA: 3'- gaCCGCa-----CGCU--------------CGGGCC-GCGG-GGCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 17547 | 0.66 | 0.398887 |
Target: 5'- -gGGCGgcGCGGGCCCGcCGUUCgGCg -3' miRNA: 3'- gaCCGCa-CGCUCGGGCcGCGGGgCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 129741 | 0.66 | 0.415123 |
Target: 5'- -gGGCG-GCgGGGCCCGGCcuucaGCaCCgGCg -3' miRNA: 3'- gaCCGCaCG-CUCGGGCCG-----CG-GGgCGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 39396 | 0.66 | 0.406954 |
Target: 5'- cCUGGCG-GCGA-CCCGa-GCCCCaGCg -3' miRNA: 3'- -GACCGCaCGCUcGGGCcgCGGGG-CGa -5' |
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23821 | 3' | -66.7 | NC_005261.1 | + | 122633 | 0.66 | 0.390924 |
Target: 5'- -cGGCGagcGCGAgGCCCGGCGCgCguacgugggCGCg -3' miRNA: 3'- gaCCGCa--CGCU-CGGGCCGCGgG---------GCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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