miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23821 3' -66.7 NC_005261.1 + 4797 0.66 0.398887
Target:  5'- -cGGCcu-CGGGCCCGGCGUcaacuuccUCCGCg -3'
miRNA:   3'- gaCCGcacGCUCGGGCCGCG--------GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 60842 0.66 0.398887
Target:  5'- -cGGCGgcgGCGAGgUCGcGCGCcgggccgagCCCGCg -3'
miRNA:   3'- gaCCGCa--CGCUCgGGC-CGCG---------GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 107815 0.66 0.388555
Target:  5'- -cGGCGgcccuaGCGGccgccgccgccucuGCCCGGuCGCCgCCGCc -3'
miRNA:   3'- gaCCGCa-----CGCU--------------CGGGCC-GCGG-GGCGa -5'
23821 3' -66.7 NC_005261.1 + 71085 0.66 0.388555
Target:  5'- -gGGCGUcCGGGCCCgagaaggcguacacGGCGCgcagcuugcgCCCGCg -3'
miRNA:   3'- gaCCGCAcGCUCGGG--------------CCGCG----------GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 82043 0.66 0.386195
Target:  5'- aCUGGUGcgucagcGCGGGCCacgucgccgggucgaCGGCGUgCCGCa -3'
miRNA:   3'- -GACCGCa------CGCUCGG---------------GCCGCGgGGCGa -5'
23821 3' -66.7 NC_005261.1 + 79209 0.66 0.398086
Target:  5'- -aGGCGaUGCcugacacggucgaGAGCgCGGCGC-CCGCg -3'
miRNA:   3'- gaCCGC-ACG-------------CUCGgGCCGCGgGGCGa -5'
23821 3' -66.7 NC_005261.1 + 122633 0.66 0.390924
Target:  5'- -cGGCGagcGCGAgGCCCGGCGCgCguacgugggCGCg -3'
miRNA:   3'- gaCCGCa--CGCU-CGGGCCGCGgG---------GCGa -5'
23821 3' -66.7 NC_005261.1 + 50834 0.66 0.398887
Target:  5'- uUGGCGccGCGAG-CUGGCGCCUgugGCUc -3'
miRNA:   3'- gACCGCa-CGCUCgGGCCGCGGGg--CGA- -5'
23821 3' -66.7 NC_005261.1 + 98309 0.66 0.380727
Target:  5'- -cGGgG-GCGGGCgCCGccgccagcggcggcGCGCCCCGUg -3'
miRNA:   3'- gaCCgCaCGCUCG-GGC--------------CGCGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 102889 0.66 0.390924
Target:  5'- -gGGCG-G-GAGCCCcGCGCCCCugGCc -3'
miRNA:   3'- gaCCGCaCgCUCGGGcCGCGGGG--CGa -5'
23821 3' -66.7 NC_005261.1 + 11951 0.66 0.398887
Target:  5'- -cGGCG-GCucGCCCGGCGCg-CGCUc -3'
miRNA:   3'- gaCCGCaCGcuCGGGCCGCGggGCGA- -5'
23821 3' -66.7 NC_005261.1 + 81428 0.66 0.390924
Target:  5'- -aGGCG-GCGucgUCGGcCGCCCCGCg -3'
miRNA:   3'- gaCCGCaCGCucgGGCC-GCGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 12065 0.66 0.383064
Target:  5'- -cGGCgGUGCG-GCagCGGCGUCCgCGCc -3'
miRNA:   3'- gaCCG-CACGCuCGg-GCCGCGGG-GCGa -5'
23821 3' -66.7 NC_005261.1 + 4293 0.66 0.383064
Target:  5'- -cGGCc-GCGGGCCCcGCGgCCgCCGCg -3'
miRNA:   3'- gaCCGcaCGCUCGGGcCGC-GG-GGCGa -5'
23821 3' -66.7 NC_005261.1 + 57932 0.66 0.398887
Target:  5'- -cGcGCGUGCu-GCCCGGCaccaGCgCCCGUg -3'
miRNA:   3'- gaC-CGCACGcuCGGGCCG----CG-GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 70597 0.66 0.383064
Target:  5'- -cGGCGUGCGcccGCCCgaagagGGCcCCCCGg- -3'
miRNA:   3'- gaCCGCACGCu--CGGG------CCGcGGGGCga -5'
23821 3' -66.7 NC_005261.1 + 16882 0.66 0.398887
Target:  5'- aUGuaGUacaGCG-GCCgGGCGCaCCCGCUc -3'
miRNA:   3'- gACcgCA---CGCuCGGgCCGCG-GGGCGA- -5'
23821 3' -66.7 NC_005261.1 + 3342 0.66 0.383064
Target:  5'- --cGCGccGCGGcGCCCGGCGCgCCgGCc -3'
miRNA:   3'- gacCGCa-CGCU-CGGGCCGCG-GGgCGa -5'
23821 3' -66.7 NC_005261.1 + 54240 0.66 0.426726
Target:  5'- -cGGCGcgcgcucaugugcaGCGcGCCCuGGCGCCgCGCa -3'
miRNA:   3'- gaCCGCa-------------CGCuCGGG-CCGCGGgGCGa -5'
23821 3' -66.7 NC_005261.1 + 81508 0.66 0.398887
Target:  5'- -cGGCGcGCGcGCcgccgCCGGCGCCaggCGCUg -3'
miRNA:   3'- gaCCGCaCGCuCG-----GGCCGCGGg--GCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.