miRNA display CGI


Results 1 - 20 of 266 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23821 3' -66.7 NC_005261.1 + 86 0.72 0.163063
Target:  5'- -cGGgGUGCGGGgcgcgccCCCGG-GCCCCGCc -3'
miRNA:   3'- gaCCgCACGCUC-------GGGCCgCGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 159 0.76 0.086354
Target:  5'- gCUGGCGgaguugGCGGGgCUGGCGCCCCugguGCUc -3'
miRNA:   3'- -GACCGCa-----CGCUCgGGCCGCGGGG----CGA- -5'
23821 3' -66.7 NC_005261.1 + 222 0.67 0.338162
Target:  5'- cCUGGUGcucGCGGGCCCcGCgagcggGCCCgGCUg -3'
miRNA:   3'- -GACCGCa--CGCUCGGGcCG------CGGGgCGA- -5'
23821 3' -66.7 NC_005261.1 + 330 0.69 0.248743
Target:  5'- -cGGCG-GCG-GCUgCGGCGgCCCGCa -3'
miRNA:   3'- gaCCGCaCGCuCGG-GCCGCgGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 545 0.69 0.278222
Target:  5'- -gGGCGgacgGCG-GCUCGGcCGCCgCGCg -3'
miRNA:   3'- gaCCGCa---CGCuCGGGCC-GCGGgGCGa -5'
23821 3' -66.7 NC_005261.1 + 1413 0.66 0.423391
Target:  5'- -cGGCGgcgGCGGGggCGGCGC-CCGCc -3'
miRNA:   3'- gaCCGCa--CGCUCggGCCGCGgGGCGa -5'
23821 3' -66.7 NC_005261.1 + 1740 0.68 0.303759
Target:  5'- -cGGUGcGCGGGCCCaGGCGCgUgGCc -3'
miRNA:   3'- gaCCGCaCGCUCGGG-CCGCGgGgCGa -5'
23821 3' -66.7 NC_005261.1 + 1781 0.71 0.206516
Target:  5'- uUGGCGccgcgGCaGAGCCgcagcggCGGCGCCCCGg- -3'
miRNA:   3'- gACCGCa----CG-CUCGG-------GCCGCGGGGCga -5'
23821 3' -66.7 NC_005261.1 + 2174 0.73 0.134741
Target:  5'- -aGGCGUGCGAG-UCGGCGCUCaGCa -3'
miRNA:   3'- gaCCGCACGCUCgGGCCGCGGGgCGa -5'
23821 3' -66.7 NC_005261.1 + 2394 0.78 0.057659
Target:  5'- gCUGGCG-GCGAgcgcGCCCGcGgGCCCCGCg -3'
miRNA:   3'- -GACCGCaCGCU----CGGGC-CgCGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 2994 0.71 0.19709
Target:  5'- -cGGCcugGCG-GCCCGGCGCcggggcuCCCGCg -3'
miRNA:   3'- gaCCGca-CGCuCGGGCCGCG-------GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 3342 0.66 0.383064
Target:  5'- --cGCGccGCGGcGCCCGGCGCgCCgGCc -3'
miRNA:   3'- gacCGCa-CGCU-CGGGCCGCG-GGgCGa -5'
23821 3' -66.7 NC_005261.1 + 3449 0.7 0.221894
Target:  5'- -gGGCGcGCGGGCCgCcGCGCCgCGCg -3'
miRNA:   3'- gaCCGCaCGCUCGG-GcCGCGGgGCGa -5'
23821 3' -66.7 NC_005261.1 + 3843 0.76 0.084218
Target:  5'- gCUGGCGgcaGCG-GCgCCGGCGCCgCGCg -3'
miRNA:   3'- -GACCGCa--CGCuCG-GGCCGCGGgGCGa -5'
23821 3' -66.7 NC_005261.1 + 3883 0.71 0.197552
Target:  5'- -cGGCGcgcagcucgGCGAGCgCGGCGCgggcgCCCGCg -3'
miRNA:   3'- gaCCGCa--------CGCUCGgGCCGCG-----GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 4181 0.66 0.415123
Target:  5'- -gGGCccGCGAGCUUcGCGCUCUGCa -3'
miRNA:   3'- gaCCGcaCGCUCGGGcCGCGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 4293 0.66 0.383064
Target:  5'- -cGGCc-GCGGGCCCcGCGgCCgCCGCg -3'
miRNA:   3'- gaCCGcaCGCUCGGGcCGC-GG-GGCGa -5'
23821 3' -66.7 NC_005261.1 + 4441 0.69 0.266109
Target:  5'- -gGGCGUcagcaGCGGGCCCuccagcggcGGCGgCCCGUc -3'
miRNA:   3'- gaCCGCA-----CGCUCGGG---------CCGCgGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 4491 0.71 0.183657
Target:  5'- -cGGCGUagccugcGCGGGCCCcagucGCGCgCCCGCg -3'
miRNA:   3'- gaCCGCA-------CGCUCGGGc----CGCG-GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 4797 0.66 0.398887
Target:  5'- -cGGCcu-CGGGCCCGGCGUcaacuuccUCCGCg -3'
miRNA:   3'- gaCCGcacGCUCGGGCCGCG--------GGGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.