miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23821 3' -66.7 NC_005261.1 + 127383 0.83 0.025353
Target:  5'- uUGGCGgcgGCGAggaGCCCGGCGCCCuCGCa -3'
miRNA:   3'- gACCGCa--CGCU---CGGGCCGCGGG-GCGa -5'
23821 3' -66.7 NC_005261.1 + 78050 0.8 0.044671
Target:  5'- -cGGUGgucGCGGGCCCGGC-CCCCGCg -3'
miRNA:   3'- gaCCGCa--CGCUCGGGCCGcGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 2394 0.78 0.057659
Target:  5'- gCUGGCG-GCGAgcgcGCCCGcGgGCCCCGCg -3'
miRNA:   3'- -GACCGCaCGCU----CGGGC-CgCGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 76014 0.77 0.076167
Target:  5'- cCUGGCGccGCGcAGCgCCgcgGGCGCCCCGCg -3'
miRNA:   3'- -GACCGCa-CGC-UCG-GG---CCGCGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 33616 0.76 0.084218
Target:  5'- -gGGCG-GCgGGGCCCGggggcGCGCCCCGCa -3'
miRNA:   3'- gaCCGCaCG-CUCGGGC-----CGCGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 3843 0.76 0.084218
Target:  5'- gCUGGCGgcaGCG-GCgCCGGCGCCgCGCg -3'
miRNA:   3'- -GACCGCa--CGCuCG-GGCCGCGGgGCGa -5'
23821 3' -66.7 NC_005261.1 + 159 0.76 0.086354
Target:  5'- gCUGGCGgaguugGCGGGgCUGGCGCCCCugguGCUc -3'
miRNA:   3'- -GACCGCa-----CGCUCgGGCCGCGGGG----CGA- -5'
23821 3' -66.7 NC_005261.1 + 137842 0.76 0.086354
Target:  5'- gCUGGCGgaguugGCGGGgCUGGCGCCCCugguGCUc -3'
miRNA:   3'- -GACCGCa-----CGCUCgGGCCGCGGGG----CGA- -5'
23821 3' -66.7 NC_005261.1 + 118922 0.76 0.088541
Target:  5'- -cGGCGccGCGGGCgCGGCGCCgCGCg -3'
miRNA:   3'- gaCCGCa-CGCUCGgGCCGCGGgGCGa -5'
23821 3' -66.7 NC_005261.1 + 38914 0.75 0.09783
Target:  5'- -cGGCGcGCGGGCCCGcGCGCCaaGCc -3'
miRNA:   3'- gaCCGCaCGCUCGGGC-CGCGGggCGa -5'
23821 3' -66.7 NC_005261.1 + 123913 0.74 0.116047
Target:  5'- gUGGgGUGCG-GCCCGagcagguGCGCgCCCGCUa -3'
miRNA:   3'- gACCgCACGCuCGGGC-------CGCG-GGGCGA- -5'
23821 3' -66.7 NC_005261.1 + 28581 0.74 0.119229
Target:  5'- -aGGCGcGCGAGCgCCGGCGggccgCCCGCg -3'
miRNA:   3'- gaCCGCaCGCUCG-GGCCGCg----GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 76599 0.74 0.119229
Target:  5'- gUGGCGcGCGcgcugccGCCCGcCGCCCCGCUg -3'
miRNA:   3'- gACCGCaCGCu------CGGGCcGCGGGGCGA- -5'
23821 3' -66.7 NC_005261.1 + 6224 0.74 0.122192
Target:  5'- cCUGGCGguccagGUGcGCCCGGggagggccugccCGCCCCGCg -3'
miRNA:   3'- -GACCGCa-----CGCuCGGGCC------------GCGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 20119 0.74 0.122192
Target:  5'- -aGGCGcGCGGGCCCGcaGCgGCUCCGCg -3'
miRNA:   3'- gaCCGCaCGCUCGGGC--CG-CGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 57422 0.74 0.125224
Target:  5'- -cGGCGccGCGAGCCCaggauGCGCaCCCGCg -3'
miRNA:   3'- gaCCGCa-CGCUCGGGc----CGCG-GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 117276 0.74 0.125224
Target:  5'- -aGGaCG-GCGAGCCUGGCGCcgagCCCGCc -3'
miRNA:   3'- gaCC-GCaCGCUCGGGCCGCG----GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 73727 0.73 0.130538
Target:  5'- -cGGCGUGCGcgcuugcgcgcgggGGUCCGGUGCCacggCCGCUu -3'
miRNA:   3'- gaCCGCACGC--------------UCGGGCCGCGG----GGCGA- -5'
23821 3' -66.7 NC_005261.1 + 31859 0.73 0.131497
Target:  5'- -cGGCGcgucuuCGGGCCCGGCGCCUuCGCg -3'
miRNA:   3'- gaCCGCac----GCUCGGGCCGCGGG-GCGa -5'
23821 3' -66.7 NC_005261.1 + 116038 0.73 0.134414
Target:  5'- aUGGUcUGCGccacgauGGCCUuGGCGCCCCGCg -3'
miRNA:   3'- gACCGcACGC-------UCGGG-CCGCGGGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.