miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23822 3' -58.2 NC_005261.1 + 31824 0.65 0.816272
Target:  5'- aGCGGcgCGCGCUGGcgcgcgccgugcuGGCCucgcGGCgCGUc -3'
miRNA:   3'- -CGCCaaGUGCGACUu------------CCGGu---CCG-GCA- -5'
23822 3' -58.2 NC_005261.1 + 46806 0.66 0.811079
Target:  5'- cGCGGcgCGCGCgGAuggcgcGcGCCAGGCgCGc -3'
miRNA:   3'- -CGCCaaGUGCGaCUu-----C-CGGUCCG-GCa -5'
23822 3' -58.2 NC_005261.1 + 94904 0.66 0.811079
Target:  5'- cGCG---CGCGCUGGAGGCgAGGaaGg -3'
miRNA:   3'- -CGCcaaGUGCGACUUCCGgUCCggCa -5'
23822 3' -58.2 NC_005261.1 + 75990 0.66 0.811079
Target:  5'- cGCGGccgcccUCGCGCUGGAcGCCcuGGcGCCGc -3'
miRNA:   3'- -CGCCa-----AGUGCGACUUcCGG--UC-CGGCa -5'
23822 3' -58.2 NC_005261.1 + 32911 0.66 0.811079
Target:  5'- -aGGggCGCGCgugGggGGCggCGGGCgGg -3'
miRNA:   3'- cgCCaaGUGCGa--CuuCCG--GUCCGgCa -5'
23822 3' -58.2 NC_005261.1 + 86464 0.66 0.811079
Target:  5'- cUGGccCGCGCcguugaUGGAcgcGGCCGGGCCGg -3'
miRNA:   3'- cGCCaaGUGCG------ACUU---CCGGUCCGGCa -5'
23822 3' -58.2 NC_005261.1 + 88045 0.66 0.811079
Target:  5'- gGCGGUccagUCACGCgccuGcGCC-GGCCGa -3'
miRNA:   3'- -CGCCA----AGUGCGacuuC-CGGuCCGGCa -5'
23822 3' -58.2 NC_005261.1 + 110244 0.66 0.802296
Target:  5'- gGCGGcgCgGCGCccgGggGGCUgcGGGCCu- -3'
miRNA:   3'- -CGCCaaG-UGCGa--CuuCCGG--UCCGGca -5'
23822 3' -58.2 NC_005261.1 + 16241 0.66 0.802296
Target:  5'- gGCGGUcgacgUC-CGCgccGGGGCCgccgGGGCCGg -3'
miRNA:   3'- -CGCCA-----AGuGCGac-UUCCGG----UCCGGCa -5'
23822 3' -58.2 NC_005261.1 + 48336 0.66 0.802296
Target:  5'- -gGGggCGCGCgc--GGCgAGGCCGa -3'
miRNA:   3'- cgCCaaGUGCGacuuCCGgUCCGGCa -5'
23822 3' -58.2 NC_005261.1 + 60846 0.66 0.802296
Target:  5'- gGCGGcgaggUCGCGC-----GCCGGGCCGa -3'
miRNA:   3'- -CGCCa----AGUGCGacuucCGGUCCGGCa -5'
23822 3' -58.2 NC_005261.1 + 22759 0.66 0.802296
Target:  5'- gGCGGcccaCGCGuCUGggGGC-GGGCCc- -3'
miRNA:   3'- -CGCCaa--GUGC-GACuuCCGgUCCGGca -5'
23822 3' -58.2 NC_005261.1 + 4186 0.66 0.802296
Target:  5'- cGCGaGcUUCGCGCUcugcaGCCAGGCCa- -3'
miRNA:   3'- -CGC-C-AAGUGCGAcuuc-CGGUCCGGca -5'
23822 3' -58.2 NC_005261.1 + 37800 0.66 0.79336
Target:  5'- cGUGcGUgacgACGCUGGAGGaCCAGcgcGCCGUc -3'
miRNA:   3'- -CGC-CAag--UGCGACUUCC-GGUC---CGGCA- -5'
23822 3' -58.2 NC_005261.1 + 2068 0.66 0.79336
Target:  5'- -aGGUacucgacCGCGCcgcgGAAGGCCAGGUCc- -3'
miRNA:   3'- cgCCAa------GUGCGa---CUUCCGGUCCGGca -5'
23822 3' -58.2 NC_005261.1 + 70985 0.66 0.79336
Target:  5'- aGCGcGUggCGCGCgGgcGGCCgccAGGCCa- -3'
miRNA:   3'- -CGC-CAa-GUGCGaCuuCCGG---UCCGGca -5'
23822 3' -58.2 NC_005261.1 + 96997 0.66 0.79336
Target:  5'- cGCGGcuaagCGCGCcauuGGgCGGGCCGUc -3'
miRNA:   3'- -CGCCaa---GUGCGacuuCCgGUCCGGCA- -5'
23822 3' -58.2 NC_005261.1 + 111983 0.66 0.79336
Target:  5'- gGCGGg--GCGCUGGAGuCCauGGGCCa- -3'
miRNA:   3'- -CGCCaagUGCGACUUCcGG--UCCGGca -5'
23822 3' -58.2 NC_005261.1 + 55805 0.66 0.790652
Target:  5'- cGCGGccUUCGcCGCcGuaaaggcguguauaAAGGCCGGGUCGUc -3'
miRNA:   3'- -CGCC--AAGU-GCGaC--------------UUCCGGUCCGGCA- -5'
23822 3' -58.2 NC_005261.1 + 71779 0.66 0.784281
Target:  5'- cGCGGcccgcUCGCaGCUGAGcgcGGCCcGGcCCGUg -3'
miRNA:   3'- -CGCCa----AGUG-CGACUU---CCGGuCC-GGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.