Results 1 - 20 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 84952 | 0.65 | 0.626291 |
Target: 5'- cCUCG-GCGGccgccgaggcgucGGGCGcGUCCGCGAuGCGc -3' miRNA: 3'- -GAGCaCGCCc------------CCCGC-UAGGCGCU-CGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 97056 | 0.69 | 0.399614 |
Target: 5'- ----gGCGGGGGGCGGcgggcacgaUCCGCGucggaGGCGc -3' miRNA: 3'- gagcaCGCCCCCCGCU---------AGGCGC-----UCGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 32508 | 0.69 | 0.416191 |
Target: 5'- aUCG-GCGGGGGGUccGcgCCGCGcccGGCc -3' miRNA: 3'- gAGCaCGCCCCCCG--CuaGGCGC---UCGu -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 20281 | 0.69 | 0.424635 |
Target: 5'- gUCGUGuCGcGGGGGCGcgCUuGCG-GCAg -3' miRNA: 3'- gAGCAC-GC-CCCCCGCuaGG-CGCuCGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 100405 | 0.69 | 0.424635 |
Target: 5'- gUUGUccaGCGGGGGGCGcAUCgaggcgcccgccUGCGAGUAc -3' miRNA: 3'- gAGCA---CGCCCCCCGC-UAG------------GCGCUCGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 98050 | 0.69 | 0.433181 |
Target: 5'- -gCGgccGCGGGcGGCGGgaCCGCGGGCGg -3' miRNA: 3'- gaGCa--CGCCCcCCGCUa-GGCGCUCGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 127743 | 0.69 | 0.450569 |
Target: 5'- gCUUG-GCGGcGGGaGCGggCCGCG-GCGg -3' miRNA: 3'- -GAGCaCGCC-CCC-CGCuaGGCGCuCGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 49120 | 0.68 | 0.468333 |
Target: 5'- cCUCGaGCGcGGcGGGCGGgacccCCGCGcGCAg -3' miRNA: 3'- -GAGCaCGC-CC-CCCGCUa----GGCGCuCGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 128069 | 0.68 | 0.468333 |
Target: 5'- -aUG-GCGGGcGGGCGggCgaGCGAGCGg -3' miRNA: 3'- gaGCaCGCCC-CCCGCuaGg-CGCUCGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 25275 | 0.7 | 0.391486 |
Target: 5'- uUCGccGCGaGGGGGCGcggucuguggCCGUGAGCGu -3' miRNA: 3'- gAGCa-CGC-CCCCCGCua--------GGCGCUCGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 68280 | 0.7 | 0.391486 |
Target: 5'- -cCGcGCGGcGGGGCcccggCCGCGGGCGc -3' miRNA: 3'- gaGCaCGCC-CCCCGcua--GGCGCUCGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 1003 | 0.71 | 0.330455 |
Target: 5'- -aCGgggGCGGGGGGCGGgggGCGGGUg -3' miRNA: 3'- gaGCa--CGCCCCCCGCUaggCGCUCGu -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 134364 | 0.75 | 0.181515 |
Target: 5'- -cCGcGCGGGGGGCGGcgCCGCuGGCGa -3' miRNA: 3'- gaGCaCGCCCCCCGCUa-GGCGcUCGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 90225 | 0.74 | 0.199795 |
Target: 5'- cCUCGcgcgGCGGGcGGGCGcgCCGuCGGGUAu -3' miRNA: 3'- -GAGCa---CGCCC-CCCGCuaGGC-GCUCGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 12774 | 0.74 | 0.209523 |
Target: 5'- -gCGgugGCGGGGGGCucGUCgGCGAGCu -3' miRNA: 3'- gaGCa--CGCCCCCCGc-UAGgCGCUCGu -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 64529 | 0.73 | 0.252587 |
Target: 5'- cCUCGU-CGGGGGGCaGGUCCGgGAcCAc -3' miRNA: 3'- -GAGCAcGCCCCCCG-CUAGGCgCUcGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 73592 | 0.72 | 0.296017 |
Target: 5'- -gCG-GCGGaGGcGGCGG-CCGCGAGCGc -3' miRNA: 3'- gaGCaCGCC-CC-CCGCUaGGCGCUCGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 13695 | 0.71 | 0.309447 |
Target: 5'- -gCGUGgGGcGGGGCGggCUGgGGGCGg -3' miRNA: 3'- gaGCACgCC-CCCCGCuaGGCgCUCGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 103865 | 0.71 | 0.316335 |
Target: 5'- -gCGgcgGCGGcGGGGCGGcgCCGcCGGGCGg -3' miRNA: 3'- gaGCa--CGCC-CCCCGCUa-GGC-GCUCGU- -5' |
|||||||
23823 | 5' | -62.6 | NC_005261.1 | + | 15496 | 0.71 | 0.330455 |
Target: 5'- gCUCGcUGCGGgcGGGGCGuguGUCgGCGuGCAg -3' miRNA: 3'- -GAGC-ACGCC--CCCCGC---UAGgCGCuCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home