miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23823 5' -62.6 NC_005261.1 + 69 0.66 0.620397
Target:  5'- aUCGgcgcGCGcGGGGGCGGggUGCgGGGCGc -3'
miRNA:   3'- gAGCa---CGC-CCCCCGCUagGCG-CUCGU- -5'
23823 5' -62.6 NC_005261.1 + 1003 0.71 0.330455
Target:  5'- -aCGgggGCGGGGGGCGGgggGCGGGUg -3'
miRNA:   3'- gaGCa--CGCCCCCCGCUaggCGCUCGu -5'
23823 5' -62.6 NC_005261.1 + 2486 0.67 0.514225
Target:  5'- gCUCGggGaaGaGcGGGUGGUCCGCGAGCc -3'
miRNA:   3'- -GAGCa-CgcC-C-CCCGCUAGGCGCUCGu -5'
23823 5' -62.6 NC_005261.1 + 11828 0.67 0.533096
Target:  5'- --aGUGgGGGcGGGgGccCCGCGGGCGc -3'
miRNA:   3'- gagCACgCCC-CCCgCuaGGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 12774 0.74 0.209523
Target:  5'- -gCGgugGCGGGGGGCucGUCgGCGAGCu -3'
miRNA:   3'- gaGCa--CGCCCCCCGc-UAGgCGCUCGu -5'
23823 5' -62.6 NC_005261.1 + 13695 0.71 0.309447
Target:  5'- -gCGUGgGGcGGGGCGggCUGgGGGCGg -3'
miRNA:   3'- gaGCACgCC-CCCCGCuaGGCgCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 15496 0.71 0.330455
Target:  5'- gCUCGcUGCGGgcGGGGCGuguGUCgGCGuGCAg -3'
miRNA:   3'- -GAGC-ACGCC--CCCCGC---UAGgCGCuCGU- -5'
23823 5' -62.6 NC_005261.1 + 20281 0.69 0.424635
Target:  5'- gUCGUGuCGcGGGGGCGcgCUuGCG-GCAg -3'
miRNA:   3'- gAGCAC-GC-CCCCCGCuaGG-CGCuCGU- -5'
23823 5' -62.6 NC_005261.1 + 22742 0.68 0.504891
Target:  5'- gUCGggcGCGGGGcGGCGGcggcccacgcgUCUGgGGGCGg -3'
miRNA:   3'- gAGCa--CGCCCC-CCGCU-----------AGGCgCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 23176 0.66 0.610579
Target:  5'- -gCGcGCcGGGGGCGAca-GCGAGCGc -3'
miRNA:   3'- gaGCaCGcCCCCCGCUaggCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 24390 0.77 0.142166
Target:  5'- gCUCGUcgGCGGcGGGGCGGUCCuGgGGGCu -3'
miRNA:   3'- -GAGCA--CGCC-CCCCGCUAGG-CgCUCGu -5'
23823 5' -62.6 NC_005261.1 + 25275 0.7 0.391486
Target:  5'- uUCGccGCGaGGGGGCGcggucuguggCCGUGAGCGu -3'
miRNA:   3'- gAGCa-CGC-CCCCCGCua--------GGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 27720 0.67 0.552209
Target:  5'- cCUCGccGCGGGaGGaGCGGagaCgCGCGGGCAg -3'
miRNA:   3'- -GAGCa-CGCCC-CC-CGCUa--G-GCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 32508 0.69 0.416191
Target:  5'- aUCG-GCGGGGGGUccGcgCCGCGcccGGCc -3'
miRNA:   3'- gAGCaCGCCCCCCG--CuaGGCGC---UCGu -5'
23823 5' -62.6 NC_005261.1 + 34933 0.66 0.610579
Target:  5'- ----cGCGGGGGGCGG-CCGgcgcgaccCGGGCc -3'
miRNA:   3'- gagcaCGCCCCCCGCUaGGC--------GCUCGu -5'
23823 5' -62.6 NC_005261.1 + 39786 0.68 0.477348
Target:  5'- -aCGUcGcCGGGGGGCGGcgcggCCGCcGGCGc -3'
miRNA:   3'- gaGCA-C-GCCCCCCGCUa----GGCGcUCGU- -5'
23823 5' -62.6 NC_005261.1 + 44019 0.67 0.517978
Target:  5'- uUCG-GCGcGGcGGGCGGccgccgcgcggcggCCGCGGGCGg -3'
miRNA:   3'- gAGCaCGC-CC-CCCGCUa-------------GGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 44268 0.68 0.504891
Target:  5'- -gCGcGCgGGGGGGCGGggcccgCCGCcAGCGg -3'
miRNA:   3'- gaGCaCG-CCCCCCGCUa-----GGCGcUCGU- -5'
23823 5' -62.6 NC_005261.1 + 46006 0.68 0.486449
Target:  5'- -gUGUGCGcGGcaGGCGAugUCCGgGAGCAg -3'
miRNA:   3'- gaGCACGC-CCc-CCGCU--AGGCgCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 46104 0.66 0.581244
Target:  5'- -aCG-GcCGGGGGccGUGGUCCGCGuccAGCAg -3'
miRNA:   3'- gaGCaC-GCCCCC--CGCUAGGCGC---UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.