miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23823 5' -62.6 NC_005261.1 + 49120 0.68 0.468333
Target:  5'- cCUCGaGCGcGGcGGGCGGgacccCCGCGcGCAg -3'
miRNA:   3'- -GAGCaCGC-CC-CCCGCUa----GGCGCuCGU- -5'
23823 5' -62.6 NC_005261.1 + 56113 0.66 0.571524
Target:  5'- -gCGaGCGGcGGGaGCGcgCCGCaGGGCGg -3'
miRNA:   3'- gaGCaCGCC-CCC-CGCuaGGCG-CUCGU- -5'
23823 5' -62.6 NC_005261.1 + 60052 0.66 0.620397
Target:  5'- -aCGgcgGCGGcgaagagcGGcGGcCGGUCCGCGGGCu -3'
miRNA:   3'- gaGCa--CGCC--------CC-CC-GCUAGGCGCUCGu -5'
23823 5' -62.6 NC_005261.1 + 64529 0.73 0.252587
Target:  5'- cCUCGU-CGGGGGGCaGGUCCGgGAcCAc -3'
miRNA:   3'- -GAGCAcGCCCCCCG-CUAGGCgCUcGU- -5'
23823 5' -62.6 NC_005261.1 + 67069 0.66 0.604696
Target:  5'- -gCGcGCGGGggcucgcucGGGCGGUCCauggcgcgacgcgguGCGGGCGg -3'
miRNA:   3'- gaGCaCGCCC---------CCCGCUAGG---------------CGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 68280 0.7 0.391486
Target:  5'- -cCGcGCGGcGGGGCcccggCCGCGGGCGc -3'
miRNA:   3'- gaGCaCGCC-CCCCGcua--GGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 69227 0.66 0.610579
Target:  5'- -cUGUGCGcgcuGGGGCGGUUCGcCGAgGCGc -3'
miRNA:   3'- gaGCACGCc---CCCCGCUAGGC-GCU-CGU- -5'
23823 5' -62.6 NC_005261.1 + 69763 0.67 0.561844
Target:  5'- ----cGCGGGGGGCGGcgCCGgggacUGAGCc -3'
miRNA:   3'- gagcaCGCCCCCCGCUa-GGC-----GCUCGu -5'
23823 5' -62.6 NC_005261.1 + 71962 0.66 0.581244
Target:  5'- gUCG-GCGcGGGGcGCGGagCGCGcGGCAg -3'
miRNA:   3'- gAGCaCGC-CCCC-CGCUagGCGC-UCGU- -5'
23823 5' -62.6 NC_005261.1 + 72445 0.67 0.533096
Target:  5'- -cCG-GCGGGGgcgcccgcGGCGAgcgCgGCGAGCGc -3'
miRNA:   3'- gaGCaCGCCCC--------CCGCUa--GgCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 73218 0.68 0.495631
Target:  5'- cCUCGa--GGGGcGCGGUggCCGCGAGCGc -3'
miRNA:   3'- -GAGCacgCCCCcCGCUA--GGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 73592 0.72 0.296017
Target:  5'- -gCG-GCGGaGGcGGCGG-CCGCGAGCGc -3'
miRNA:   3'- gaGCaCGCC-CC-CCGCUaGGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 74283 0.68 0.477348
Target:  5'- -gCG-GCGGgcGGGGCGGUcgCCGcCGGGCAg -3'
miRNA:   3'- gaGCaCGCC--CCCCGCUA--GGC-GCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 74449 0.67 0.523628
Target:  5'- -cCG-GCGGGGGGUGGgggcgCCGCccccGGCGc -3'
miRNA:   3'- gaGCaCGCCCCCCGCUa----GGCGc---UCGU- -5'
23823 5' -62.6 NC_005261.1 + 78614 0.67 0.561844
Target:  5'- aCUCGgcUGUGGucGGGGCGccagGUCCGcCGAGUu -3'
miRNA:   3'- -GAGC--ACGCC--CCCCGC----UAGGC-GCUCGu -5'
23823 5' -62.6 NC_005261.1 + 81364 0.66 0.581244
Target:  5'- ---uUGCGGGGGGCGccgggcucgCUGgGGGCGc -3'
miRNA:   3'- gagcACGCCCCCCGCua-------GGCgCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 84952 0.65 0.626291
Target:  5'- cCUCG-GCGGccgccgaggcgucGGGCGcGUCCGCGAuGCGc -3'
miRNA:   3'- -GAGCaCGCCc------------CCCGC-UAGGCGCU-CGU- -5'
23823 5' -62.6 NC_005261.1 + 88138 0.68 0.486449
Target:  5'- cCUCGcgccGCGcGGGGGCGccccggCCGCGcAGCc -3'
miRNA:   3'- -GAGCa---CGC-CCCCCGCua----GGCGC-UCGu -5'
23823 5' -62.6 NC_005261.1 + 88467 0.67 0.542625
Target:  5'- -gCGUGUGGGcGGGCcGUgCCGCgccgGAGCGc -3'
miRNA:   3'- gaGCACGCCC-CCCGcUA-GGCG----CUCGU- -5'
23823 5' -62.6 NC_005261.1 + 90225 0.74 0.199795
Target:  5'- cCUCGcgcgGCGGGcGGGCGcgCCGuCGGGUAu -3'
miRNA:   3'- -GAGCa---CGCCC-CCCGCuaGGC-GCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.