miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23823 5' -62.6 NC_005261.1 + 137752 0.66 0.620397
Target:  5'- aUCGgcgcGCGcGGGGGCGGggUGCgGGGCGc -3'
miRNA:   3'- gAGCa---CGC-CCCCCGCUagGCG-CUCGU- -5'
23823 5' -62.6 NC_005261.1 + 134364 0.75 0.181515
Target:  5'- -cCGcGCGGGGGGCGGcgCCGCuGGCGa -3'
miRNA:   3'- gaGCaCGCCCCCCGCUa-GGCGcUCGU- -5'
23823 5' -62.6 NC_005261.1 + 129657 0.66 0.610579
Target:  5'- -gCGgcgGCGGcaGGGGCGGgaCCGgGGGCGu -3'
miRNA:   3'- gaGCa--CGCC--CCCCGCUa-GGCgCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 128069 0.68 0.468333
Target:  5'- -aUG-GCGGGcGGGCGggCgaGCGAGCGg -3'
miRNA:   3'- gaGCaCGCCC-CCCGCuaGg-CGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 127811 0.66 0.600777
Target:  5'- -gCG-GCGGcGGGccgcucgcgcucGCGG-CCGCGAGCAg -3'
miRNA:   3'- gaGCaCGCC-CCC------------CGCUaGGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 127743 0.69 0.450569
Target:  5'- gCUUG-GCGGcGGGaGCGggCCGCG-GCGg -3'
miRNA:   3'- -GAGCaCGCC-CCC-CGCuaGGCGCuCGU- -5'
23823 5' -62.6 NC_005261.1 + 125269 0.66 0.616468
Target:  5'- cCUCGUcCGGGGGcCGcuggaagucaggCCGCGGGCGc -3'
miRNA:   3'- -GAGCAcGCCCCCcGCua----------GGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 121108 0.67 0.551249
Target:  5'- -cCGUGCGGGuccucuaGGGCGcggaggCGCGGGCGc -3'
miRNA:   3'- gaGCACGCCC-------CCCGCuag---GCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 118165 0.67 0.533096
Target:  5'- -cCGUcGCGGcGGGGCuugccgucuGggCCGCGGGCc -3'
miRNA:   3'- gaGCA-CGCC-CCCCG---------CuaGGCGCUCGu -5'
23823 5' -62.6 NC_005261.1 + 106845 0.67 0.552209
Target:  5'- gUCGUccagcccgccGCcuGGGGGGCGGgcgUCCGCGGccucGCAc -3'
miRNA:   3'- gAGCA----------CG--CCCCCCGCU---AGGCGCU----CGU- -5'
23823 5' -62.6 NC_005261.1 + 105271 0.66 0.571524
Target:  5'- gCUCG-GCGGGcGGCaGcgCCGgCGAGCc -3'
miRNA:   3'- -GAGCaCGCCCcCCG-CuaGGC-GCUCGu -5'
23823 5' -62.6 NC_005261.1 + 103865 0.71 0.316335
Target:  5'- -gCGgcgGCGGcGGGGCGGcgCCGcCGGGCGg -3'
miRNA:   3'- gaGCa--CGCC-CCCCGCUa-GGC-GCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 100405 0.69 0.424635
Target:  5'- gUUGUccaGCGGGGGGCGcAUCgaggcgcccgccUGCGAGUAc -3'
miRNA:   3'- gAGCA---CGCCCCCCGC-UAG------------GCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 98927 0.67 0.542625
Target:  5'- gUCGgcUGCGGGGGGCagcgcGUCCucguaguCGAGCGu -3'
miRNA:   3'- gAGC--ACGCCCCCCGc----UAGGc------GCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 98050 0.69 0.433181
Target:  5'- -gCGgccGCGGGcGGCGGgaCCGCGGGCGg -3'
miRNA:   3'- gaGCa--CGCCCcCCGCUa-GGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 97652 0.66 0.59002
Target:  5'- --gGUGCcgcaccuGGGGGGCcggcGUCCGCGGGg- -3'
miRNA:   3'- gagCACG-------CCCCCCGc---UAGGCGCUCgu -5'
23823 5' -62.6 NC_005261.1 + 97056 0.69 0.399614
Target:  5'- ----gGCGGGGGGCGGcgggcacgaUCCGCGucggaGGCGc -3'
miRNA:   3'- gagcaCGCCCCCCGCU---------AGGCGC-----UCGU- -5'
23823 5' -62.6 NC_005261.1 + 95812 0.66 0.600777
Target:  5'- -cCG-GCGGGGGcucGCGGUCCucgcggcgcuuGUGGGCGg -3'
miRNA:   3'- gaGCaCGCCCCC---CGCUAGG-----------CGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 94863 0.68 0.476443
Target:  5'- gCUCGcGCacggcccGGGcGGGCGGcCCGCGuGCAg -3'
miRNA:   3'- -GAGCaCG-------CCC-CCCGCUaGGCGCuCGU- -5'
23823 5' -62.6 NC_005261.1 + 93572 0.67 0.533096
Target:  5'- --gGUGCGGcGGGacGCGAUCgCGCGcucGGCGa -3'
miRNA:   3'- gagCACGCC-CCC--CGCUAG-GCGC---UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.