miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23823 5' -62.6 NC_005261.1 + 106845 0.67 0.552209
Target:  5'- gUCGUccagcccgccGCcuGGGGGGCGGgcgUCCGCGGccucGCAc -3'
miRNA:   3'- gAGCA----------CG--CCCCCCGCU---AGGCGCU----CGU- -5'
23823 5' -62.6 NC_005261.1 + 27720 0.67 0.552209
Target:  5'- cCUCGccGCGGGaGGaGCGGagaCgCGCGGGCAg -3'
miRNA:   3'- -GAGCa-CGCCC-CC-CGCUa--G-GCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 121108 0.67 0.551249
Target:  5'- -cCGUGCGGGuccucuaGGGCGcggaggCGCGGGCGc -3'
miRNA:   3'- gaGCACGCCC-------CCCGCuag---GCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 98927 0.67 0.542625
Target:  5'- gUCGgcUGCGGGGGGCagcgcGUCCucguaguCGAGCGu -3'
miRNA:   3'- gAGC--ACGCCCCCCGc----UAGGc------GCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 88467 0.67 0.542625
Target:  5'- -gCGUGUGGGcGGGCcGUgCCGCgccgGAGCGc -3'
miRNA:   3'- gaGCACGCCC-CCCGcUA-GGCG----CUCGU- -5'
23823 5' -62.6 NC_005261.1 + 93572 0.67 0.533096
Target:  5'- --gGUGCGGcGGGacGCGAUCgCGCGcucGGCGa -3'
miRNA:   3'- gagCACGCC-CCC--CGCUAG-GCGC---UCGU- -5'
23823 5' -62.6 NC_005261.1 + 72445 0.67 0.533096
Target:  5'- -cCG-GCGGGGgcgcccgcGGCGAgcgCgGCGAGCGc -3'
miRNA:   3'- gaGCaCGCCCC--------CCGCUa--GgCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 118165 0.67 0.533096
Target:  5'- -cCGUcGCGGcGGGGCuugccgucuGggCCGCGGGCc -3'
miRNA:   3'- gaGCA-CGCC-CCCCG---------CuaGGCGCUCGu -5'
23823 5' -62.6 NC_005261.1 + 11828 0.67 0.533096
Target:  5'- --aGUGgGGGcGGGgGccCCGCGGGCGc -3'
miRNA:   3'- gagCACgCCC-CCCgCuaGGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 74449 0.67 0.523628
Target:  5'- -cCG-GCGGGGGGUGGgggcgCCGCccccGGCGc -3'
miRNA:   3'- gaGCaCGCCCCCCGCUa----GGCGc---UCGU- -5'
23823 5' -62.6 NC_005261.1 + 44019 0.67 0.517978
Target:  5'- uUCG-GCGcGGcGGGCGGccgccgcgcggcggCCGCGGGCGg -3'
miRNA:   3'- gAGCaCGC-CC-CCCGCUa-------------GGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 2486 0.67 0.514225
Target:  5'- gCUCGggGaaGaGcGGGUGGUCCGCGAGCc -3'
miRNA:   3'- -GAGCa-CgcC-C-CCCGCUAGGCGCUCGu -5'
23823 5' -62.6 NC_005261.1 + 22742 0.68 0.504891
Target:  5'- gUCGggcGCGGGGcGGCGGcggcccacgcgUCUGgGGGCGg -3'
miRNA:   3'- gAGCa--CGCCCC-CCGCU-----------AGGCgCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 44268 0.68 0.504891
Target:  5'- -gCGcGCgGGGGGGCGGggcccgCCGCcAGCGg -3'
miRNA:   3'- gaGCaCG-CCCCCCGCUa-----GGCGcUCGU- -5'
23823 5' -62.6 NC_005261.1 + 73218 0.68 0.495631
Target:  5'- cCUCGa--GGGGcGCGGUggCCGCGAGCGc -3'
miRNA:   3'- -GAGCacgCCCCcCGCUA--GGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 46006 0.68 0.486449
Target:  5'- -gUGUGCGcGGcaGGCGAugUCCGgGAGCAg -3'
miRNA:   3'- gaGCACGC-CCc-CCGCU--AGGCgCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 88138 0.68 0.486449
Target:  5'- cCUCGcgccGCGcGGGGGCGccccggCCGCGcAGCc -3'
miRNA:   3'- -GAGCa---CGC-CCCCCGCua----GGCGC-UCGu -5'
23823 5' -62.6 NC_005261.1 + 74283 0.68 0.477348
Target:  5'- -gCG-GCGGgcGGGGCGGUcgCCGcCGGGCAg -3'
miRNA:   3'- gaGCaCGCC--CCCCGCUA--GGC-GCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 39786 0.68 0.477348
Target:  5'- -aCGUcGcCGGGGGGCGGcgcggCCGCcGGCGc -3'
miRNA:   3'- gaGCA-C-GCCCCCCGCUa----GGCGcUCGU- -5'
23823 5' -62.6 NC_005261.1 + 94863 0.68 0.476443
Target:  5'- gCUCGcGCacggcccGGGcGGGCGGcCCGCGuGCAg -3'
miRNA:   3'- -GAGCaCG-------CCC-CCCGCUaGGCGCuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.