Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23828 | 3' | -46.2 | NC_005261.1 | + | 8594 | 1.1 | 0.018775 |
Target: 5'- uGCCAGCGUUCGCACAAAACUCAAUAAg -3' miRNA: 3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 8710 | 1.1 | 0.018775 |
Target: 5'- uGCCAGCGUUCGCACAAAACUCAAUAAg -3' miRNA: 3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 24762 | 1.06 | 0.032265 |
Target: 5'- uGCCAGUGUUCGCACAGAGCUCAAUAAg -3' miRNA: 3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 8898 | 1.05 | 0.035298 |
Target: 5'- uGCCAGUGUUCGCACAAAGCUCAAUAAu -3' miRNA: 3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 24963 | 0.75 | 0.903099 |
Target: 5'- cCCAGaaUUCGCACuuGGCUCAAUAAu -3' miRNA: 3'- cGGUCgcAAGCGUGuuUUGAGUUAUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 25077 | 0.75 | 0.903099 |
Target: 5'- cCCAGaaUUCGCACuuGGCUCAAUAAu -3' miRNA: 3'- cGGUCgcAAGCGUGuuUUGAGUUAUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 112174 | 0.74 | 0.934 |
Target: 5'- cGCCGGCcg-CGCGCGGGGCUCGc--- -3' miRNA: 3'- -CGGUCGcaaGCGUGUUUUGAGUuauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 39993 | 0.74 | 0.949117 |
Target: 5'- cGCCGGCGUgCGUgaaggcguacgaGCAGAACUCGGg-- -3' miRNA: 3'- -CGGUCGCAaGCG------------UGUUUUGAGUUauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 68156 | 0.73 | 0.961736 |
Target: 5'- gGCCGGCuacacgCGCGCGGAGCUCGc--- -3' miRNA: 3'- -CGGUCGcaa---GCGUGUUUUGAGUuauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 61230 | 0.73 | 0.96541 |
Target: 5'- cGCuCGGCGUUCGgCGCG-AGCUCGAc-- -3' miRNA: 3'- -CG-GUCGCAAGC-GUGUuUUGAGUUauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 72236 | 0.73 | 0.968829 |
Target: 5'- gGCCGGCGgugCGCGCAAAG-UCGAc-- -3' miRNA: 3'- -CGGUCGCaa-GCGUGUUUUgAGUUauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 76472 | 0.72 | 0.973201 |
Target: 5'- cGCCGGCGcgCGCGCGGAccccgagcccucggcGCUCGc--- -3' miRNA: 3'- -CGGUCGCaaGCGUGUUU---------------UGAGUuauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 40263 | 0.72 | 0.977633 |
Target: 5'- uGgCGGCGgcCGCgGCGGGGCUCAGUAGa -3' miRNA: 3'- -CgGUCGCaaGCG-UGUUUUGAGUUAUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 36963 | 0.71 | 0.984452 |
Target: 5'- cGCCGcGCG---GCGCAGAGCUCGGUGc -3' miRNA: 3'- -CGGU-CGCaagCGUGUUUUGAGUUAUu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 69056 | 0.71 | 0.984452 |
Target: 5'- uGCCAGCGcUUCGCGCuauGC-CAGUu- -3' miRNA: 3'- -CGGUCGC-AAGCGUGuuuUGaGUUAuu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 100274 | 0.71 | 0.989562 |
Target: 5'- cGCCGGUGg-CGCACGAAGCggCAGa-- -3' miRNA: 3'- -CGGUCGCaaGCGUGUUUUGa-GUUauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 5137 | 0.71 | 0.989562 |
Target: 5'- cGCCGGCGcUCGCGCGc--CUCGGc-- -3' miRNA: 3'- -CGGUCGCaAGCGUGUuuuGAGUUauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 39004 | 0.7 | 0.990936 |
Target: 5'- uGCCAGCGcgcccaCGCGCAGAGCguccgCGAg-- -3' miRNA: 3'- -CGGUCGCaa----GCGUGUUUUGa----GUUauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 122323 | 0.7 | 0.992163 |
Target: 5'- gGCCGGCGgucagguggCGCucGCAGAGCUCGc--- -3' miRNA: 3'- -CGGUCGCaa-------GCG--UGUUUUGAGUuauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 105137 | 0.7 | 0.994221 |
Target: 5'- cGCCGGCG--CGCGCAGguccucgcGGCUCGAg-- -3' miRNA: 3'- -CGGUCGCaaGCGUGUU--------UUGAGUUauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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