Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23828 | 3' | -46.2 | NC_005261.1 | + | 1897 | 0.68 | 0.998606 |
Target: 5'- cGCCAGCG--CGCGCc--GCUCAGg-- -3' miRNA: 3'- -CGGUCGCaaGCGUGuuuUGAGUUauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 3800 | 0.69 | 0.997525 |
Target: 5'- cGCCAGC--UCGCGCAGccGCUCGc--- -3' miRNA: 3'- -CGGUCGcaAGCGUGUUu-UGAGUuauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 3871 | 0.69 | 0.997944 |
Target: 5'- gGCCGGCGagcacggCGCGCA--GCUCGGc-- -3' miRNA: 3'- -CGGUCGCaa-----GCGUGUuuUGAGUUauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 5137 | 0.71 | 0.989562 |
Target: 5'- cGCCGGCGcUCGCGCGc--CUCGGc-- -3' miRNA: 3'- -CGGUCGCaAGCGUGUuuuGAGUUauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 8594 | 1.1 | 0.018775 |
Target: 5'- uGCCAGCGUUCGCACAAAACUCAAUAAg -3' miRNA: 3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 8710 | 1.1 | 0.018775 |
Target: 5'- uGCCAGCGUUCGCACAAAACUCAAUAAg -3' miRNA: 3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 8898 | 1.05 | 0.035298 |
Target: 5'- uGCCAGUGUUCGCACAAAGCUCAAUAAu -3' miRNA: 3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 12321 | 0.67 | 0.999528 |
Target: 5'- aGCCGGCGggCGCGC---GCUUGGc-- -3' miRNA: 3'- -CGGUCGCaaGCGUGuuuUGAGUUauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 14940 | 0.66 | 0.999825 |
Target: 5'- cGCCAGCuggCGCugGAAGCgagCGGg-- -3' miRNA: 3'- -CGGUCGcaaGCGugUUUUGa--GUUauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 15232 | 0.66 | 0.999825 |
Target: 5'- aGCCGGCGUugaggccccgcUCGCAguGGGCcgCGAUc- -3' miRNA: 3'- -CGGUCGCA-----------AGCGUguUUUGa-GUUAuu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 17006 | 0.66 | 0.999866 |
Target: 5'- cGCCAGCaugUCGCACGcggccgcGCUCGu--- -3' miRNA: 3'- -CGGUCGca-AGCGUGUuu-----UGAGUuauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 19279 | 0.69 | 0.997944 |
Target: 5'- cGCCAGCGUcUCGUACGcGACg------ -3' miRNA: 3'- -CGGUCGCA-AGCGUGUuUUGaguuauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 19377 | 0.67 | 0.999406 |
Target: 5'- uGCCAGCcaggcCGUaguaGCGGGGCUCGGUGAu -3' miRNA: 3'- -CGGUCGcaa--GCG----UGUUUUGAGUUAUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 22828 | 0.67 | 0.999708 |
Target: 5'- cGCCGcCGUUgGCGCcGGGCUCGGg-- -3' miRNA: 3'- -CGGUcGCAAgCGUGuUUUGAGUUauu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 24762 | 1.06 | 0.032265 |
Target: 5'- uGCCAGUGUUCGCACAGAGCUCAAUAAg -3' miRNA: 3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 24963 | 0.75 | 0.903099 |
Target: 5'- cCCAGaaUUCGCACuuGGCUCAAUAAu -3' miRNA: 3'- cGGUCgcAAGCGUGuuUUGAGUUAUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 25077 | 0.75 | 0.903099 |
Target: 5'- cCCAGaaUUCGCACuuGGCUCAAUAAu -3' miRNA: 3'- cGGUCgcAAGCGUGuuUUGAGUUAUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 28592 | 0.67 | 0.999708 |
Target: 5'- cGCCGGCGggccgccCGCGCcGAGCUgGcgGAg -3' miRNA: 3'- -CGGUCGCaa-----GCGUGuUUUGAgUuaUU- -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 36963 | 0.71 | 0.984452 |
Target: 5'- cGCCGcGCG---GCGCAGAGCUCGGUGc -3' miRNA: 3'- -CGGU-CGCaagCGUGUUUUGAGUUAUu -5' |
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23828 | 3' | -46.2 | NC_005261.1 | + | 39004 | 0.7 | 0.990936 |
Target: 5'- uGCCAGCGcgcccaCGCGCAGAGCguccgCGAg-- -3' miRNA: 3'- -CGGUCGCaa----GCGUGUUUUGa----GUUauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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