miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2383 5' -56 NC_001416.1 + 5035 0.66 0.641371
Target:  5'- aUGACgCCGAugGagccuguccggGCGGuCUgcgugaccagacgccGGGAGGCGGc -3'
miRNA:   3'- -ACUG-GGCUugU-----------UGCC-GA---------------CCCUCUGCC- -5'
2383 5' -56 NC_001416.1 + 11378 0.67 0.624976
Target:  5'- aGACCCgccgccugaaagaGAACAugGGCacgcuggagaccUGGGcAGACaGGa -3'
miRNA:   3'- aCUGGG-------------CUUGUugCCG------------ACCC-UCUG-CC- -5'
2383 5' -56 NC_001416.1 + 8696 0.67 0.582493
Target:  5'- aGAgCUGGACAGCGauacCUGGcAGGCGGa -3'
miRNA:   3'- aCUgGGCUUGUUGCc---GACCcUCUGCC- -5'
2383 5' -56 NC_001416.1 + 14916 0.68 0.57168
Target:  5'- aGAaaCUGAGCGACGGCUGGuaucaGGuACGGa -3'
miRNA:   3'- aCUg-GGCUUGUUGCCGACCc----UC-UGCC- -5'
2383 5' -56 NC_001416.1 + 11044 0.68 0.539562
Target:  5'- aGAgCCGGGCAgGCGGCaGGGcuGACGu -3'
miRNA:   3'- aCUgGGCUUGU-UGCCGaCCCu-CUGCc -5'
2383 5' -56 NC_001416.1 + 3792 0.68 0.528988
Target:  5'- -aGCgCCGGuc--CGGCUGGGAGGCGc -3'
miRNA:   3'- acUG-GGCUuguuGCCGACCCUCUGCc -5'
2383 5' -56 NC_001416.1 + 12422 0.72 0.340037
Target:  5'- aGGCCUGAAgucCGGCUGGaguGAGugGGa -3'
miRNA:   3'- aCUGGGCUUguuGCCGACC---CUCugCC- -5'
2383 5' -56 NC_001416.1 + 15908 0.74 0.258968
Target:  5'- aGAUacaaCGuAACggUGGCUGGGuGACGGa -3'
miRNA:   3'- aCUGg---GC-UUGuuGCCGACCCuCUGCC- -5'
2383 5' -56 NC_001416.1 + 16699 1.1 0.000764
Target:  5'- uUGACCCGAACAACGGCUGGGAGACGGc -3'
miRNA:   3'- -ACUGGGCUUGUUGCCGACCCUCUGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.