Results 41 - 60 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23832 | 3' | -50.4 | NC_005261.1 | + | 28672 | 0.81 | 0.471918 |
Target: 5'- cGACGACgACGAGGGgGAgGAGGAAGa -3' miRNA: 3'- -CUGCUGaUGCUCCUgCUgCUUCUUCg -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 56003 | 0.8 | 0.501419 |
Target: 5'- cGCGGCggggGCGGGGGCGGgGAAGAcGCa -3' miRNA: 3'- cUGCUGa---UGCUCCUGCUgCUUCUuCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 10620 | 0.8 | 0.511433 |
Target: 5'- gGACGACUACGAGGACGACu------- -3' miRNA: 3'- -CUGCUGAUGCUCCUGCUGcuucuucg -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 88288 | 0.8 | 0.521529 |
Target: 5'- cGACGACggcgGCGccAGcGACGACGAAGAGGg -3' miRNA: 3'- -CUGCUGa---UGC--UC-CUGCUGCUUCUUCg -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 113277 | 0.8 | 0.521529 |
Target: 5'- cGACGGCUACGAGGGCGugGuccucucGCu -3' miRNA: 3'- -CUGCUGAUGCUCCUGCugCuucuu--CG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 96269 | 0.79 | 0.573037 |
Target: 5'- -uCGAgUACGAGGACGACGcuGgcGCg -3' miRNA: 3'- cuGCUgAUGCUCCUGCUGCuuCuuCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 10644 | 1.12 | 0.006599 |
Target: 5'- gGACGACUACGAGGACGACGAAGAAGCu -3' miRNA: 3'- -CUGCUGAUGCUCCUGCUGCUUCUUCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 1120 | 0.78 | 0.625646 |
Target: 5'- gGACGACgAgGAGGACG-CGGAGGAcGCg -3' miRNA: 3'- -CUGCUGaUgCUCCUGCuGCUUCUU-CG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 43098 | 0.78 | 0.625646 |
Target: 5'- cGCGcGCUACGAGGACGugGcgcGGGAuuGGCg -3' miRNA: 3'- cUGC-UGAUGCUCCUGCugC---UUCU--UCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 128878 | 0.78 | 0.625646 |
Target: 5'- cGACGACgagGCGGGGGCcggGugGGAGGcgGGCg -3' miRNA: 3'- -CUGCUGa--UGCUCCUG---CugCUUCU--UCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 105157 | 0.77 | 0.636216 |
Target: 5'- cGCGGCU-CGAGGGCGGCGuccacGggGCc -3' miRNA: 3'- cUGCUGAuGCUCCUGCUGCuu---CuuCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 17641 | 0.77 | 0.646783 |
Target: 5'- aGCGAUcGCGAGGcCGAUGAGGAuGGCg -3' miRNA: 3'- cUGCUGaUGCUCCuGCUGCUUCU-UCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 33601 | 0.77 | 0.667872 |
Target: 5'- gGGCGGCgccgGCGcGGGCGGCGGggcccGGggGCg -3' miRNA: 3'- -CUGCUGa---UGCuCCUGCUGCU-----UCuuCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 112579 | 0.77 | 0.667872 |
Target: 5'- cGAgGGCUGCGAGGGCGuCGuguGGAcGCu -3' miRNA: 3'- -CUgCUGAUGCUCCUGCuGCu--UCUuCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 30533 | 0.77 | 0.678374 |
Target: 5'- gGAgGAggAgGAGGACGAgGAAGAGGCc -3' miRNA: 3'- -CUgCUgaUgCUCCUGCUgCUUCUUCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 78422 | 0.77 | 0.678374 |
Target: 5'- gGGCGAUgGgGGGGGCGAUGggGAgaaGGCg -3' miRNA: 3'- -CUGCUGaUgCUCCUGCUGCuuCU---UCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 121414 | 0.76 | 0.699247 |
Target: 5'- cGACGGCUGcCGccgccgcuacGGGGCGGCGggGcGGGCa -3' miRNA: 3'- -CUGCUGAU-GC----------UCCUGCUGCuuC-UUCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 134968 | 0.76 | 0.699247 |
Target: 5'- cGGCGACgcagacgGCGAGGACGGggcCGccGggGCg -3' miRNA: 3'- -CUGCUGa------UGCUCCUGCU---GCuuCuuCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 120294 | 0.76 | 0.709599 |
Target: 5'- cGCGugUucuuCGAGGGCGGCGAGgcugucugcGAGGCg -3' miRNA: 3'- cUGCugAu---GCUCCUGCUGCUU---------CUUCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 80060 | 0.76 | 0.719881 |
Target: 5'- uGGCGGCggGCGcggGGGGCGugGggGAcGCg -3' miRNA: 3'- -CUGCUGa-UGC---UCCUGCugCuuCUuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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