miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23832 3' -50.4 NC_005261.1 + 117607 0.73 0.858891
Target:  5'- cGACGAUgACGAcGACGACG--GAAGCg -3'
miRNA:   3'- -CUGCUGaUGCUcCUGCUGCuuCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 113895 0.72 0.881699
Target:  5'- cGGCGACgcgGCGGGcGCGAUGGccGAGGCa -3'
miRNA:   3'- -CUGCUGa--UGCUCcUGCUGCUu-CUUCG- -5'
23832 3' -50.4 NC_005261.1 + 97827 0.72 0.888836
Target:  5'- aGACGGCggcaaaaACGGGGGCGGCGGgcgccgccgcGGcAGCg -3'
miRNA:   3'- -CUGCUGa------UGCUCCUGCUGCU----------UCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 15028 0.72 0.888836
Target:  5'- cGGCGGgUGcCGGGGGCGuaGCGggGggGg -3'
miRNA:   3'- -CUGCUgAU-GCUCCUGC--UGCuuCuuCg -5'
23832 3' -50.4 NC_005261.1 + 121485 0.72 0.888836
Target:  5'- -cCGGCUGCcgccacGGGGCGGCGggGcGGGCa -3'
miRNA:   3'- cuGCUGAUGc-----UCCUGCUGCuuC-UUCG- -5'
23832 3' -50.4 NC_005261.1 + 50993 0.72 0.895732
Target:  5'- cGACGGCggcGCGuGGGCG-CGGcGGGAGCu -3'
miRNA:   3'- -CUGCUGa--UGCuCCUGCuGCU-UCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 39772 0.72 0.895732
Target:  5'- gGAUGGCcuCGAGGACGuCGccGGGggGCg -3'
miRNA:   3'- -CUGCUGauGCUCCUGCuGC--UUCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 11396 0.72 0.895732
Target:  5'- uGugGGCgggcGCGGGGAaagagagaGAgGAGGAGGCg -3'
miRNA:   3'- -CugCUGa---UGCUCCUg-------CUgCUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 1413 0.72 0.901072
Target:  5'- cGGCGGCgGCGGGGGCGGCGcccgccuccAGCa -3'
miRNA:   3'- -CUGCUGaUGCUCCUGCUGCuucu-----UCG- -5'
23832 3' -50.4 NC_005261.1 + 90179 0.72 0.902382
Target:  5'- gGGgGGggACGGGGAgGACGcAGGGAGCg -3'
miRNA:   3'- -CUgCUgaUGCUCCUgCUGC-UUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 1026 0.72 0.902382
Target:  5'- gGugGGCUuuuGCgGAGGGCGGCGGgcGGcGGCg -3'
miRNA:   3'- -CugCUGA---UG-CUCCUGCUGCU--UCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 86546 0.72 0.902382
Target:  5'- -cCGGCcACGuagGGGGCGGCGAuuugguAGAAGCg -3'
miRNA:   3'- cuGCUGaUGC---UCCUGCUGCU------UCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 35221 0.72 0.908784
Target:  5'- uGGCGGCUGgaGGGGAccCGGCaggaGGAGAGGCg -3'
miRNA:   3'- -CUGCUGAUg-CUCCU--GCUG----CUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 76535 0.72 0.908784
Target:  5'- gGGCGGguaccucgcccuCUACGGcauGGGCGACGAGGGcgAGCu -3'
miRNA:   3'- -CUGCU------------GAUGCU---CCUGCUGCUUCU--UCG- -5'
23832 3' -50.4 NC_005261.1 + 77770 0.72 0.908784
Target:  5'- --gGGCgGCGGGGACGACGAGGccuacuaccccGGCg -3'
miRNA:   3'- cugCUGaUGCUCCUGCUGCUUCu----------UCG- -5'
23832 3' -50.4 NC_005261.1 + 110225 0.72 0.908784
Target:  5'- cGGCGACgccuccaGCGuGGGCGGCGcggcgcccGGGggGCu -3'
miRNA:   3'- -CUGCUGa------UGCuCCUGCUGC--------UUCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 59661 0.71 0.914934
Target:  5'- gGGCGACUGCGgccGGGuCGuCGAAGccGCc -3'
miRNA:   3'- -CUGCUGAUGC---UCCuGCuGCUUCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 15711 0.71 0.914934
Target:  5'- -uCGGCUGgGuGGACGGCGAAcgcgacGggGCc -3'
miRNA:   3'- cuGCUGAUgCuCCUGCUGCUU------CuuCG- -5'
23832 3' -50.4 NC_005261.1 + 47537 0.71 0.920831
Target:  5'- cGACGGCguuccCGGGcGCGGCGAAGuuGGCg -3'
miRNA:   3'- -CUGCUGau---GCUCcUGCUGCUUCu-UCG- -5'
23832 3' -50.4 NC_005261.1 + 94251 0.71 0.926473
Target:  5'- cGAUGGCcacgGCGcAGGGCGGCGccgcGAGGCu -3'
miRNA:   3'- -CUGCUGa---UGC-UCCUGCUGCuu--CUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.