miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23832 3' -50.4 NC_005261.1 + 17641 0.77 0.646783
Target:  5'- aGCGAUcGCGAGGcCGAUGAGGAuGGCg -3'
miRNA:   3'- cUGCUGaUGCUCCuGCUGCUUCU-UCG- -5'
23832 3' -50.4 NC_005261.1 + 112579 0.77 0.667872
Target:  5'- cGAgGGCUGCGAGGGCGuCGuguGGAcGCu -3'
miRNA:   3'- -CUgCUGAUGCUCCUGCuGCu--UCUuCG- -5'
23832 3' -50.4 NC_005261.1 + 33601 0.77 0.667872
Target:  5'- gGGCGGCgccgGCGcGGGCGGCGGggcccGGggGCg -3'
miRNA:   3'- -CUGCUGa---UGCuCCUGCUGCU-----UCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 30533 0.77 0.678374
Target:  5'- gGAgGAggAgGAGGACGAgGAAGAGGCc -3'
miRNA:   3'- -CUgCUgaUgCUCCUGCUgCUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 78422 0.77 0.678374
Target:  5'- gGGCGAUgGgGGGGGCGAUGggGAgaaGGCg -3'
miRNA:   3'- -CUGCUGaUgCUCCUGCUGCuuCU---UCG- -5'
23832 3' -50.4 NC_005261.1 + 121414 0.76 0.699247
Target:  5'- cGACGGCUGcCGccgccgcuacGGGGCGGCGggGcGGGCa -3'
miRNA:   3'- -CUGCUGAU-GC----------UCCUGCUGCuuC-UUCG- -5'
23832 3' -50.4 NC_005261.1 + 134968 0.76 0.699247
Target:  5'- cGGCGACgcagacgGCGAGGACGGggcCGccGggGCg -3'
miRNA:   3'- -CUGCUGa------UGCUCCUGCU---GCuuCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 120294 0.76 0.709599
Target:  5'- cGCGugUucuuCGAGGGCGGCGAGgcugucugcGAGGCg -3'
miRNA:   3'- cUGCugAu---GCUCCUGCUGCUU---------CUUCG- -5'
23832 3' -50.4 NC_005261.1 + 80060 0.76 0.719881
Target:  5'- uGGCGGCggGCGcggGGGGCGugGggGAcGCg -3'
miRNA:   3'- -CUGCUGa-UGC---UCCUGCugCuuCUuCG- -5'
23832 3' -50.4 NC_005261.1 + 110799 0.75 0.750203
Target:  5'- gGACGGCgggcgaggagGCGGGGGCGgACGggGccGCg -3'
miRNA:   3'- -CUGCUGa---------UGCUCCUGC-UGCuuCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 69720 0.75 0.760102
Target:  5'- -uCGACaGCGAGGAggaaGAgGAGGAGGCg -3'
miRNA:   3'- cuGCUGaUGCUCCUg---CUgCUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 69313 0.75 0.769881
Target:  5'- uGGCGGCgggaGCGGGGgugacggcgacaGCGACGGAGAcGGCg -3'
miRNA:   3'- -CUGCUGa---UGCUCC------------UGCUGCUUCU-UCG- -5'
23832 3' -50.4 NC_005261.1 + 8795 0.75 0.788091
Target:  5'- cGGCGGCUGCagccgccGAGGGCu-UGAAGggGCg -3'
miRNA:   3'- -CUGCUGAUG-------CUCCUGcuGCUUCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 28247 0.75 0.789035
Target:  5'- cGCGAUaGCGGGGGCugcuCGggGggGCg -3'
miRNA:   3'- cUGCUGaUGCUCCUGcu--GCuuCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 55218 0.74 0.807587
Target:  5'- cGGCGGCc-CGAGG-CGGCGAGGGcGGCa -3'
miRNA:   3'- -CUGCUGauGCUCCuGCUGCUUCU-UCG- -5'
23832 3' -50.4 NC_005261.1 + 5569 0.74 0.82546
Target:  5'- aGCGGCggagAUGGGGGCGcCGAGGgcGCc -3'
miRNA:   3'- cUGCUGa---UGCUCCUGCuGCUUCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 111445 0.73 0.842583
Target:  5'- gGACGACcgGCGAgccGGGCGcCGgcGAGGCc -3'
miRNA:   3'- -CUGCUGa-UGCU---CCUGCuGCuuCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 123141 0.73 0.850843
Target:  5'- uGACGGCUauauaggcauACGAGGGCGGgGcGGgcGCg -3'
miRNA:   3'- -CUGCUGA----------UGCUCCUGCUgCuUCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 32926 0.73 0.858891
Target:  5'- gGGCGGCggGCGGGGGgggGGCGggGAGGg -3'
miRNA:   3'- -CUGCUGa-UGCUCCUg--CUGCuuCUUCg -5'
23832 3' -50.4 NC_005261.1 + 117267 0.73 0.858891
Target:  5'- cGCGcCU-CGAGGACGGCGAGccuGGCg -3'
miRNA:   3'- cUGCuGAuGCUCCUGCUGCUUcu-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.