Results 1 - 20 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23832 | 3' | -50.4 | NC_005261.1 | + | 10644 | 1.12 | 0.006599 |
Target: 5'- gGACGACUACGAGGACGACGAAGAAGCu -3' miRNA: 3'- -CUGCUGAUGCUCCUGCUGCUUCUUCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 22946 | 0.89 | 0.171164 |
Target: 5'- uGACGACgagacgACGAGGACGACGAggccgaggaccgggaGGAGGCg -3' miRNA: 3'- -CUGCUGa-----UGCUCCUGCUGCU---------------UCUUCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 134841 | 0.89 | 0.178452 |
Target: 5'- -cCGACUGCGAGGAgGACGggGAcaaGGCg -3' miRNA: 3'- cuGCUGAUGCUCCUgCUGCuuCU---UCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 90149 | 0.87 | 0.219146 |
Target: 5'- gGGCGAUgGgGAGGAUGACGggGAGGCg -3' miRNA: 3'- -CUGCUGaUgCUCCUGCUGCuuCUUCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 22901 | 0.87 | 0.236344 |
Target: 5'- cGACGACgaggacgACGAGGACGACGAGGAc-- -3' miRNA: 3'- -CUGCUGa------UGCUCCUGCUGCUUCUucg -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 51999 | 0.86 | 0.248427 |
Target: 5'- -cCGACUuCGAGGACGACGAcgaGGAGGCc -3' miRNA: 3'- cuGCUGAuGCUCCUGCUGCU---UCUUCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 30680 | 0.82 | 0.424809 |
Target: 5'- gGACGGggACGGGGACgggGACGggGAGGCc -3' miRNA: 3'- -CUGCUgaUGCUCCUG---CUGCuuCUUCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 34286 | 0.82 | 0.428475 |
Target: 5'- cGGCGGCcgGCGGGGAcgccgggagcgagacCGACGggGAGGCc -3' miRNA: 3'- -CUGCUGa-UGCUCCU---------------GCUGCuuCUUCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 30458 | 0.81 | 0.452747 |
Target: 5'- cGAgGACgggggggACGGGGGgGACGAGGAGGCc -3' miRNA: 3'- -CUgCUGa------UGCUCCUgCUGCUUCUUCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 28672 | 0.81 | 0.471918 |
Target: 5'- cGACGACgACGAGGGgGAgGAGGAAGa -3' miRNA: 3'- -CUGCUGaUGCUCCUgCUgCUUCUUCg -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 56003 | 0.8 | 0.501419 |
Target: 5'- cGCGGCggggGCGGGGGCGGgGAAGAcGCa -3' miRNA: 3'- cUGCUGa---UGCUCCUGCUgCUUCUuCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 10620 | 0.8 | 0.511433 |
Target: 5'- gGACGACUACGAGGACGACu------- -3' miRNA: 3'- -CUGCUGAUGCUCCUGCUGcuucuucg -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 88288 | 0.8 | 0.521529 |
Target: 5'- cGACGACggcgGCGccAGcGACGACGAAGAGGg -3' miRNA: 3'- -CUGCUGa---UGC--UC-CUGCUGCUUCUUCg -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 113277 | 0.8 | 0.521529 |
Target: 5'- cGACGGCUACGAGGGCGugGuccucucGCu -3' miRNA: 3'- -CUGCUGAUGCUCCUGCugCuucuu--CG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 96269 | 0.79 | 0.573037 |
Target: 5'- -uCGAgUACGAGGACGACGcuGgcGCg -3' miRNA: 3'- cuGCUgAUGCUCCUGCUGCuuCuuCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 97950 | 0.78 | 0.604529 |
Target: 5'- cGGCGGCaACGAGGGaggUGGCGgcGGAGCg -3' miRNA: 3'- -CUGCUGaUGCUCCU---GCUGCuuCUUCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 1120 | 0.78 | 0.625646 |
Target: 5'- gGACGACgAgGAGGACG-CGGAGGAcGCg -3' miRNA: 3'- -CUGCUGaUgCUCCUGCuGCUUCUU-CG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 43098 | 0.78 | 0.625646 |
Target: 5'- cGCGcGCUACGAGGACGugGcgcGGGAuuGGCg -3' miRNA: 3'- cUGC-UGAUGCUCCUGCugC---UUCU--UCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 128878 | 0.78 | 0.625646 |
Target: 5'- cGACGACgagGCGGGGGCcggGugGGAGGcgGGCg -3' miRNA: 3'- -CUGCUGa--UGCUCCUG---CugCUUCU--UCG- -5' |
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23832 | 3' | -50.4 | NC_005261.1 | + | 105157 | 0.77 | 0.636216 |
Target: 5'- cGCGGCU-CGAGGGCGGCGuccacGggGCc -3' miRNA: 3'- cUGCUGAuGCUCCUGCUGCuu---CuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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