miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23832 3' -50.4 NC_005261.1 + 70 0.66 0.99362
Target:  5'- -uCGGCgcgcGCGGGGGCGGgGugcGggGCg -3'
miRNA:   3'- cuGCUGa---UGCUCCUGCUgCuu-CuuCG- -5'
23832 3' -50.4 NC_005261.1 + 261 0.7 0.941871
Target:  5'- cGGCGGCUGCGGcGGcggcuGCGGCGgcGGcugcGGCg -3'
miRNA:   3'- -CUGCUGAUGCU-CC-----UGCUGCuuCU----UCG- -5'
23832 3' -50.4 NC_005261.1 + 297 0.7 0.941871
Target:  5'- cGGCGGCUGCGGcGGcggcuGCGGCGgcGGcugcGGCg -3'
miRNA:   3'- -CUGCUGAUGCU-CC-----UGCUGCuuCU----UCG- -5'
23832 3' -50.4 NC_005261.1 + 385 0.69 0.965967
Target:  5'- uGGCGGCgGCGGcGGCGGCGgcGGcAGCg -3'
miRNA:   3'- -CUGCUGaUGCUcCUGCUGCuuCU-UCG- -5'
23832 3' -50.4 NC_005261.1 + 465 0.71 0.93186
Target:  5'- cGACGGCcgGCG-GGAUGGCGcGGGGAGg -3'
miRNA:   3'- -CUGCUGa-UGCuCCUGCUGC-UUCUUCg -5'
23832 3' -50.4 NC_005261.1 + 993 0.69 0.972135
Target:  5'- aGCGGaggagACGGGGGCGGgGGgcgGGggGCg -3'
miRNA:   3'- cUGCUga---UGCUCCUGCUgCU---UCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 1026 0.72 0.902382
Target:  5'- gGugGGCUuuuGCgGAGGGCGGCGGgcGGcGGCg -3'
miRNA:   3'- -CugCUGA---UG-CUCCUGCUGCU--UCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 1120 0.78 0.625646
Target:  5'- gGACGACgAgGAGGACG-CGGAGGAcGCg -3'
miRNA:   3'- -CUGCUGaUgCUCCUGCuGCUUCUU-CG- -5'
23832 3' -50.4 NC_005261.1 + 1413 0.72 0.901072
Target:  5'- cGGCGGCgGCGGGGGCGGCGcccgccuccAGCa -3'
miRNA:   3'- -CUGCUGaUGCUCCUGCUGCuucu-----UCG- -5'
23832 3' -50.4 NC_005261.1 + 5402 0.66 0.995952
Target:  5'- aGCGAgaGCGcGGGCGccgcgaACGAAGGAGa -3'
miRNA:   3'- cUGCUgaUGCuCCUGC------UGCUUCUUCg -5'
23832 3' -50.4 NC_005261.1 + 5569 0.74 0.82546
Target:  5'- aGCGGCggagAUGGGGGCGcCGAGGgcGCc -3'
miRNA:   3'- cUGCUGa---UGCUCCUGCuGCUUCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 5654 0.68 0.983975
Target:  5'- gGGCgGGCaACGAGGAgggagaGGgGGAGAAGCu -3'
miRNA:   3'- -CUG-CUGaUGCUCCUg-----CUgCUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 5723 0.67 0.992638
Target:  5'- cGCGGa---GAGGcCGGCGgGAGAAGCg -3'
miRNA:   3'- cUGCUgaugCUCCuGCUGC-UUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 5847 0.69 0.969161
Target:  5'- uACGGCggcCGAGagaggggucucGACGACGGAGAgaGGCu -3'
miRNA:   3'- cUGCUGau-GCUC-----------CUGCUGCUUCU--UCG- -5'
23832 3' -50.4 NC_005261.1 + 8795 0.75 0.788091
Target:  5'- cGGCGGCUGCagccgccGAGGGCu-UGAAGggGCg -3'
miRNA:   3'- -CUGCUGAUG-------CUCCUGcuGCUUCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 8843 0.67 0.991539
Target:  5'- gGGCGGggAC-AGGcCGugGGAGggGCc -3'
miRNA:   3'- -CUGCUgaUGcUCCuGCugCUUCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 10620 0.8 0.511433
Target:  5'- gGACGACUACGAGGACGACu------- -3'
miRNA:   3'- -CUGCUGAUGCUCCUGCUGcuucuucg -5'
23832 3' -50.4 NC_005261.1 + 10644 1.12 0.006599
Target:  5'- gGACGACUACGAGGACGACGAAGAAGCu -3'
miRNA:   3'- -CUGCUGAUGCUCCUGCUGCUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 10860 0.68 0.981984
Target:  5'- --gGACgGCGAGGACGACGuguucuuccccGAGcccGGCg -3'
miRNA:   3'- cugCUGaUGCUCCUGCUGC-----------UUCu--UCG- -5'
23832 3' -50.4 NC_005261.1 + 11396 0.72 0.895732
Target:  5'- uGugGGCgggcGCGGGGAaagagagaGAgGAGGAGGCg -3'
miRNA:   3'- -CugCUGa---UGCUCCUg-------CUgCUUCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.