miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23832 3' -50.4 NC_005261.1 + 138136 0.71 0.93186
Target:  5'- cGACGGCcgGCG-GGAUGGCGcGGGGAGg -3'
miRNA:   3'- -CUGCUGa-UGCuCCUGCUGC-UUCUUCg -5'
23832 3' -50.4 NC_005261.1 + 138056 0.69 0.965967
Target:  5'- uGGCGGCgGCGGcGGCGGCGgcGGcAGCg -3'
miRNA:   3'- -CUGCUGaUGCUcCUGCUGCuuCU-UCG- -5'
23832 3' -50.4 NC_005261.1 + 137980 0.7 0.941871
Target:  5'- cGGCGGCUGCGGcGGcggcuGCGGCGgcGGcugcGGCg -3'
miRNA:   3'- -CUGCUGAUGCU-CC-----UGCUGCuuCU----UCG- -5'
23832 3' -50.4 NC_005261.1 + 137944 0.7 0.941871
Target:  5'- cGGCGGCUGCGGcGGcggcuGCGGCGgcGGcugcGGCg -3'
miRNA:   3'- -CUGCUGAUGCU-CC-----UGCUGCuuCU----UCG- -5'
23832 3' -50.4 NC_005261.1 + 137753 0.66 0.99362
Target:  5'- -uCGGCgcgcGCGGGGGCGGgGugcGggGCg -3'
miRNA:   3'- cuGCUGa---UGCUCCUGCUgCuu-CuuCG- -5'
23832 3' -50.4 NC_005261.1 + 137393 0.7 0.946498
Target:  5'- aGCGAgggAgGAGGAgCGAgGGAGGAGCg -3'
miRNA:   3'- cUGCUga-UgCUCCU-GCUgCUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 136614 0.7 0.950875
Target:  5'- aGCGGCgcgcgcgcgcCGAGGGCGGCGGGaAGGCc -3'
miRNA:   3'- cUGCUGau--------GCUCCUGCUGCUUcUUCG- -5'
23832 3' -50.4 NC_005261.1 + 136182 0.68 0.979814
Target:  5'- aGCGAggAaaaGGGGGCGaggagaagggaGCGAGGAGGCa -3'
miRNA:   3'- cUGCUgaUg--CUCCUGC-----------UGCUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 135210 0.67 0.991539
Target:  5'- aGGCGGCgcaGAGGGCcACGGccGAGCg -3'
miRNA:   3'- -CUGCUGaugCUCCUGcUGCUucUUCG- -5'
23832 3' -50.4 NC_005261.1 + 135033 0.69 0.969161
Target:  5'- cGCGGCgGCGAGGcCGACGccuGcGGCg -3'
miRNA:   3'- cUGCUGaUGCUCCuGCUGCuu-CuUCG- -5'
23832 3' -50.4 NC_005261.1 + 134968 0.76 0.699247
Target:  5'- cGGCGACgcagacgGCGAGGACGGggcCGccGggGCg -3'
miRNA:   3'- -CUGCUGa------UGCUCCUGCU---GCuuCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 134841 0.89 0.178452
Target:  5'- -cCGACUGCGAGGAgGACGggGAcaaGGCg -3'
miRNA:   3'- cuGCUGAUGCUCCUgCUGCuuCU---UCG- -5'
23832 3' -50.4 NC_005261.1 + 134692 0.67 0.987451
Target:  5'- cGACGACUGCGAcuGCGACcgcGgcGCg -3'
miRNA:   3'- -CUGCUGAUGCUccUGCUGcuuCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 134575 0.69 0.962547
Target:  5'- cGCGGCUGCGcAGGGCGggccugGCGAGcauaAAGCg -3'
miRNA:   3'- cUGCUGAUGC-UCCUGC------UGCUUc---UUCG- -5'
23832 3' -50.4 NC_005261.1 + 134373 0.67 0.992638
Target:  5'- gGGCGGCgcCGcuGGCGACGgcGAgAGCg -3'
miRNA:   3'- -CUGCUGauGCucCUGCUGCuuCU-UCG- -5'
23832 3' -50.4 NC_005261.1 + 133807 0.67 0.988955
Target:  5'- --gGGCUGCuc-GACGGCGAcGAGGCg -3'
miRNA:   3'- cugCUGAUGcucCUGCUGCUuCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 132526 0.68 0.977454
Target:  5'- gGACGAgUACGAGcGCGcccucgcgcGCGAGGGcgaGGCg -3'
miRNA:   3'- -CUGCUgAUGCUCcUGC---------UGCUUCU---UCG- -5'
23832 3' -50.4 NC_005261.1 + 130490 0.67 0.991539
Target:  5'- -uCGGCgGCGAGGGCcccGACGAcGuGGCg -3'
miRNA:   3'- cuGCUGaUGCUCCUG---CUGCUuCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 129726 0.68 0.981984
Target:  5'- -cCGGCUGCagcggcAGGGCGGCGggGcccGGCc -3'
miRNA:   3'- cuGCUGAUGc-----UCCUGCUGCuuCu--UCG- -5'
23832 3' -50.4 NC_005261.1 + 129640 0.71 0.931333
Target:  5'- aGGCGGCaACGGuGGCGGCGGcggcggcAGggGCg -3'
miRNA:   3'- -CUGCUGaUGCUcCUGCUGCU-------UCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.