miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23832 3' -50.4 NC_005261.1 + 11433 0.68 0.983975
Target:  5'- --gGGCgGgGGGGGCGGCGGaagagggaaaaAGAAGCg -3'
miRNA:   3'- cugCUGaUgCUCCUGCUGCU-----------UCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 12409 0.66 0.996553
Target:  5'- cACGACggaGCccuccaGGGGCGGCGGAG-GGCu -3'
miRNA:   3'- cUGCUGa--UGc-----UCCUGCUGCUUCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 15028 0.72 0.888836
Target:  5'- cGGCGGgUGcCGGGGGCGuaGCGggGggGg -3'
miRNA:   3'- -CUGCUgAU-GCUCCUGC--UGCuuCuuCg -5'
23832 3' -50.4 NC_005261.1 + 15711 0.71 0.914934
Target:  5'- -uCGGCUGgGuGGACGGCGAAcgcgacGggGCc -3'
miRNA:   3'- cuGCUGAUgCuCCUGCUGCUU------CuuCG- -5'
23832 3' -50.4 NC_005261.1 + 17641 0.77 0.646783
Target:  5'- aGCGAUcGCGAGGcCGAUGAGGAuGGCg -3'
miRNA:   3'- cUGCUGaUGCUCCuGCUGCUUCU-UCG- -5'
23832 3' -50.4 NC_005261.1 + 19245 0.69 0.972135
Target:  5'- --aGACUGCGGGGGCGcUGAAc-AGCg -3'
miRNA:   3'- cugCUGAUGCUCCUGCuGCUUcuUCG- -5'
23832 3' -50.4 NC_005261.1 + 20410 0.68 0.985794
Target:  5'- cACGugUGCGgauAGGcACGGCGccuucccgggGGGGAGCg -3'
miRNA:   3'- cUGCugAUGC---UCC-UGCUGC----------UUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 21489 0.68 0.983975
Target:  5'- gGACGaguGCUACGAGGAUGAgGccccgcuAGCa -3'
miRNA:   3'- -CUGC---UGAUGCUCCUGCUgCuucu---UCG- -5'
23832 3' -50.4 NC_005261.1 + 22130 0.68 0.977454
Target:  5'- uGCGGuauacgGCGGGGGgGGgGAAGggGCa -3'
miRNA:   3'- cUGCUga----UGCUCCUgCUgCUUCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 22470 0.67 0.991539
Target:  5'- --aGACcACGAGauCGAgGAGGAAGCg -3'
miRNA:   3'- cugCUGaUGCUCcuGCUgCUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 22557 0.71 0.930271
Target:  5'- cGGCGAgaUACGGGGaggggagggggagaGCGGCGGAGGcGGCg -3'
miRNA:   3'- -CUGCUg-AUGCUCC--------------UGCUGCUUCU-UCG- -5'
23832 3' -50.4 NC_005261.1 + 22702 0.66 0.99362
Target:  5'- -cCGGCgACGAGGcCGuCGAGG-AGCc -3'
miRNA:   3'- cuGCUGaUGCUCCuGCuGCUUCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 22901 0.87 0.236344
Target:  5'- cGACGACgaggacgACGAGGACGACGAGGAc-- -3'
miRNA:   3'- -CUGCUGa------UGCUCCUGCUGCUUCUucg -5'
23832 3' -50.4 NC_005261.1 + 22946 0.89 0.171164
Target:  5'- uGACGACgagacgACGAGGACGACGAggccgaggaccgggaGGAGGCg -3'
miRNA:   3'- -CUGCUGa-----UGCUCCUGCUGCU---------------UCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 23617 0.68 0.983975
Target:  5'- cGCcGCUGcCGGGGcGCGGCGggGGucgGGCg -3'
miRNA:   3'- cUGcUGAU-GCUCC-UGCUGCuuCU---UCG- -5'
23832 3' -50.4 NC_005261.1 + 24385 0.67 0.991539
Target:  5'- gGugGGCU-CGucGGCGGCGggGcGGUc -3'
miRNA:   3'- -CugCUGAuGCucCUGCUGCuuCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 28010 0.66 0.995952
Target:  5'- cGCGAaa--GGGGGcCGGCGggGAGGa -3'
miRNA:   3'- cUGCUgaugCUCCU-GCUGCuuCUUCg -5'
23832 3' -50.4 NC_005261.1 + 28247 0.75 0.789035
Target:  5'- cGCGAUaGCGGGGGCugcuCGggGggGCg -3'
miRNA:   3'- cUGCUGaUGCUCCUGcu--GCuuCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 28672 0.81 0.471918
Target:  5'- cGACGACgACGAGGGgGAgGAGGAAGa -3'
miRNA:   3'- -CUGCUGaUGCUCCUgCUgCUUCUUCg -5'
23832 3' -50.4 NC_005261.1 + 29097 0.7 0.941871
Target:  5'- cGGgGACU-CGGGGAcCGACGccgaGGGGAGCc -3'
miRNA:   3'- -CUgCUGAuGCUCCU-GCUGC----UUCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.