miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23832 3' -50.4 NC_005261.1 + 5402 0.66 0.995952
Target:  5'- aGCGAgaGCGcGGGCGccgcgaACGAAGGAGa -3'
miRNA:   3'- cUGCUgaUGCuCCUGC------UGCUUCUUCg -5'
23832 3' -50.4 NC_005261.1 + 60009 0.66 0.996553
Target:  5'- cGCGACggGCaGGGAC-ACGAAG-AGCc -3'
miRNA:   3'- cUGCUGa-UGcUCCUGcUGCUUCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 70 0.66 0.99362
Target:  5'- -uCGGCgcgcGCGGGGGCGGgGugcGggGCg -3'
miRNA:   3'- cuGCUGa---UGCUCCUGCUgCuu-CuuCG- -5'
23832 3' -50.4 NC_005261.1 + 89607 0.66 0.995269
Target:  5'- cGACGGCUACGGGaagcugaaccgcGGCGGCGucuuccGCg -3'
miRNA:   3'- -CUGCUGAUGCUC------------CUGCUGCuucuu-CG- -5'
23832 3' -50.4 NC_005261.1 + 22702 0.66 0.99362
Target:  5'- -cCGGCgACGAGGcCGuCGAGG-AGCc -3'
miRNA:   3'- cuGCUGaUGCUCCuGCuGCUUCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 12409 0.66 0.996553
Target:  5'- cACGACggaGCccuccaGGGGCGGCGGAG-GGCu -3'
miRNA:   3'- cUGCUGa--UGc-----UCCUGCUGCUUCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 60320 0.66 0.995952
Target:  5'- aGACGAUcAgGuGGACGACGGuguuuGcGGCg -3'
miRNA:   3'- -CUGCUGaUgCuCCUGCUGCUu----CuUCG- -5'
23832 3' -50.4 NC_005261.1 + 70962 0.66 0.994494
Target:  5'- -cCGACgcCGc-GACGGCGAAGAagAGCg -3'
miRNA:   3'- cuGCUGauGCucCUGCUGCUUCU--UCG- -5'
23832 3' -50.4 NC_005261.1 + 130490 0.67 0.991539
Target:  5'- -uCGGCgGCGAGGGCcccGACGAcGuGGCg -3'
miRNA:   3'- cuGCUGaUGCUCCUG---CUGCUuCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 43594 0.67 0.991539
Target:  5'- cGCGACgccgucuccgGCGAGGAgGGCGAGu--GCu -3'
miRNA:   3'- cUGCUGa---------UGCUCCUgCUGCUUcuuCG- -5'
23832 3' -50.4 NC_005261.1 + 50615 0.67 0.988955
Target:  5'- gGGCGccccgauugguGCUccACGcGGGCGGCGggGuGGCg -3'
miRNA:   3'- -CUGC-----------UGA--UGCuCCUGCUGCuuCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 88180 0.67 0.991539
Target:  5'- gGGCGACgcCGGcGGCGcCGgcGAGGCg -3'
miRNA:   3'- -CUGCUGauGCUcCUGCuGCuuCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 68692 0.67 0.988955
Target:  5'- uGGgGGCcgGCGcGGACGACGgcGgcGCc -3'
miRNA:   3'- -CUgCUGa-UGCuCCUGCUGCuuCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 94686 0.67 0.987451
Target:  5'- aGGCG-CUGgccacCGAGGACGugGccgagcuGGAGCg -3'
miRNA:   3'- -CUGCuGAU-----GCUCCUGCugCuu-----CUUCG- -5'
23832 3' -50.4 NC_005261.1 + 134692 0.67 0.987451
Target:  5'- cGACGACUGCGAcuGCGACcgcGgcGCg -3'
miRNA:   3'- -CUGCUGAUGCUccUGCUGcuuCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 134373 0.67 0.992638
Target:  5'- gGGCGGCgcCGcuGGCGACGgcGAgAGCg -3'
miRNA:   3'- -CUGCUGauGCucCUGCUGCuuCU-UCG- -5'
23832 3' -50.4 NC_005261.1 + 106016 0.67 0.987451
Target:  5'- aACGACaGCGAGGACc----GGAGGCa -3'
miRNA:   3'- cUGCUGaUGCUCCUGcugcuUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 63462 0.67 0.987451
Target:  5'- aGCGcCcGCGAGGguugcACGGCGAgcGGAAGUa -3'
miRNA:   3'- cUGCuGaUGCUCC-----UGCUGCU--UCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 127639 0.67 0.987451
Target:  5'- cGACGGCggcgGCGccggGGGGCGcGCGGGuucGggGCg -3'
miRNA:   3'- -CUGCUGa---UGC----UCCUGC-UGCUU---CuuCG- -5'
23832 3' -50.4 NC_005261.1 + 91405 0.67 0.992638
Target:  5'- cGCGcCcgGCGAGGACGugGAGcgcGAcGCc -3'
miRNA:   3'- cUGCuGa-UGCUCCUGCugCUU---CUuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.