miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23832 3' -50.4 NC_005261.1 + 119266 0.66 0.994494
Target:  5'- uGCGcGCUccugcucgcuggGCGGGGGCucgcCGAGGAAGCg -3'
miRNA:   3'- cUGC-UGA------------UGCUCCUGcu--GCUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 34599 0.66 0.994494
Target:  5'- cGACGACgACGGccuGGcCGACGcgcuGGAGCc -3'
miRNA:   3'- -CUGCUGaUGCU---CCuGCUGCuu--CUUCG- -5'
23832 3' -50.4 NC_005261.1 + 45359 0.66 0.99362
Target:  5'- gGAgGGCUgcaGCGAGGAgcGCGucGggGCc -3'
miRNA:   3'- -CUgCUGA---UGCUCCUgcUGCuuCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 92910 0.66 0.99362
Target:  5'- aGCGAg-ACGAGGGCcacgccgugccGGCGGAGcAGCu -3'
miRNA:   3'- cUGCUgaUGCUCCUG-----------CUGCUUCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 78500 0.66 0.99362
Target:  5'- gGACaGAC-GCGAGaa-GAUGggGAGGCg -3'
miRNA:   3'- -CUG-CUGaUGCUCcugCUGCuuCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 22702 0.66 0.99362
Target:  5'- -cCGGCgACGAGGcCGuCGAGG-AGCc -3'
miRNA:   3'- cuGCUGaUGCUCCuGCuGCUUCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 137753 0.66 0.99362
Target:  5'- -uCGGCgcgcGCGGGGGCGGgGugcGggGCg -3'
miRNA:   3'- cuGCUGa---UGCUCCUGCUgCuu-CuuCG- -5'
23832 3' -50.4 NC_005261.1 + 70 0.66 0.99362
Target:  5'- -uCGGCgcgcGCGGGGGCGGgGugcGggGCg -3'
miRNA:   3'- cuGCUGa---UGCUCCUGCUgCuu-CuuCG- -5'
23832 3' -50.4 NC_005261.1 + 97092 0.67 0.992638
Target:  5'- -cCGGCUGggcCGGGGGCGccagccgggccGCGGccGGAGGCg -3'
miRNA:   3'- cuGCUGAU---GCUCCUGC-----------UGCU--UCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 75490 0.67 0.992638
Target:  5'- gGGCcGCUACGAGcGCGGgGcgcuGGAGGCg -3'
miRNA:   3'- -CUGcUGAUGCUCcUGCUgCu---UCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 134373 0.67 0.992638
Target:  5'- gGGCGGCgcCGcuGGCGACGgcGAgAGCg -3'
miRNA:   3'- -CUGCUGauGCucCUGCUGCuuCU-UCG- -5'
23832 3' -50.4 NC_005261.1 + 5723 0.67 0.992638
Target:  5'- cGCGGa---GAGGcCGGCGgGAGAAGCg -3'
miRNA:   3'- cUGCUgaugCUCCuGCUGC-UUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 91405 0.67 0.992638
Target:  5'- cGCGcCcgGCGAGGACGugGAGcgcGAcGCc -3'
miRNA:   3'- cUGCuGa-UGCUCCUGCugCUU---CUuCG- -5'
23832 3' -50.4 NC_005261.1 + 57890 0.67 0.991539
Target:  5'- -cCGGC-ACGGGGACGGCcaccgcgucgcgGAAGAcGGCc -3'
miRNA:   3'- cuGCUGaUGCUCCUGCUG------------CUUCU-UCG- -5'
23832 3' -50.4 NC_005261.1 + 135210 0.67 0.991539
Target:  5'- aGGCGGCgcaGAGGGCcACGGccGAGCg -3'
miRNA:   3'- -CUGCUGaugCUCCUGcUGCUucUUCG- -5'
23832 3' -50.4 NC_005261.1 + 24385 0.67 0.991539
Target:  5'- gGugGGCU-CGucGGCGGCGggGcGGUc -3'
miRNA:   3'- -CugCUGAuGCucCUGCUGCuuCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 44947 0.67 0.991539
Target:  5'- cGGCGcuggagagccuGCUGCG-GGACGcgcGCGAGGGcccgGGCg -3'
miRNA:   3'- -CUGC-----------UGAUGCuCCUGC---UGCUUCU----UCG- -5'
23832 3' -50.4 NC_005261.1 + 43594 0.67 0.991539
Target:  5'- cGCGACgccgucuccgGCGAGGAgGGCGAGu--GCu -3'
miRNA:   3'- cUGCUGa---------UGCUCCUgCUGCUUcuuCG- -5'
23832 3' -50.4 NC_005261.1 + 22470 0.67 0.991539
Target:  5'- --aGACcACGAGauCGAgGAGGAAGCg -3'
miRNA:   3'- cugCUGaUGCUCcuGCUgCUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 88180 0.67 0.991539
Target:  5'- gGGCGACgcCGGcGGCGcCGgcGAGGCg -3'
miRNA:   3'- -CUGCUGauGCUcCUGCuGCuuCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.