miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23832 3' -50.4 NC_005261.1 + 88180 0.67 0.991539
Target:  5'- gGGCGACgcCGGcGGCGcCGgcGAGGCg -3'
miRNA:   3'- -CUGCUGauGCUcCUGCuGCuuCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 43594 0.67 0.991539
Target:  5'- cGCGACgccgucuccgGCGAGGAgGGCGAGu--GCu -3'
miRNA:   3'- cUGCUGa---------UGCUCCUgCUGCUUcuuCG- -5'
23832 3' -50.4 NC_005261.1 + 135210 0.67 0.991539
Target:  5'- aGGCGGCgcaGAGGGCcACGGccGAGCg -3'
miRNA:   3'- -CUGCUGaugCUCCUGcUGCUucUUCG- -5'
23832 3' -50.4 NC_005261.1 + 103611 0.67 0.991065
Target:  5'- cGGCGGCagcGCGGGaGGCGGCGGcggccaucgccucGAAGCg -3'
miRNA:   3'- -CUGCUGa--UGCUC-CUGCUGCUu------------CUUCG- -5'
23832 3' -50.4 NC_005261.1 + 57987 0.67 0.99082
Target:  5'- cGCGGCcGCGccgccaaaaagcgccAGGACGugGAAGugccgcGGCg -3'
miRNA:   3'- cUGCUGaUGC---------------UCCUGCugCUUCu-----UCG- -5'
23832 3' -50.4 NC_005261.1 + 45617 0.67 0.990314
Target:  5'- cGGCGGCgcgGCGcGGcGCGGCGGGcccgcgccGGAGCa -3'
miRNA:   3'- -CUGCUGa--UGCuCC-UGCUGCUU--------CUUCG- -5'
23832 3' -50.4 NC_005261.1 + 90871 0.67 0.990314
Target:  5'- cGACGccguCUGCGcgcuGGGCGACGGcauGGCg -3'
miRNA:   3'- -CUGCu---GAUGCu---CCUGCUGCUucuUCG- -5'
23832 3' -50.4 NC_005261.1 + 52756 0.67 0.990314
Target:  5'- aGugGcCcGCGAGGACGuagcucuguACGAGGAucuGCu -3'
miRNA:   3'- -CugCuGaUGCUCCUGC---------UGCUUCUu--CG- -5'
23832 3' -50.4 NC_005261.1 + 109112 0.67 0.990314
Target:  5'- -cCGGCcAUGAGGGCGGCGguGucGUg -3'
miRNA:   3'- cuGCUGaUGCUCCUGCUGCuuCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 133807 0.67 0.988955
Target:  5'- --gGGCUGCuc-GACGGCGAcGAGGCg -3'
miRNA:   3'- cugCUGAUGcucCUGCUGCUuCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 104991 0.67 0.988955
Target:  5'- -cCGGCgcccaGCGcGGGCGGCGGucGggGCg -3'
miRNA:   3'- cuGCUGa----UGCuCCUGCUGCUu-CuuCG- -5'
23832 3' -50.4 NC_005261.1 + 68692 0.67 0.988955
Target:  5'- uGGgGGCcgGCGcGGACGACGgcGgcGCc -3'
miRNA:   3'- -CUgCUGa-UGCuCCUGCUGCuuCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 50615 0.67 0.988955
Target:  5'- gGGCGccccgauugguGCUccACGcGGGCGGCGggGuGGCg -3'
miRNA:   3'- -CUGC-----------UGA--UGCuCCUGCUGCuuCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 58292 0.67 0.988955
Target:  5'- cGGCG-CgcCGGGGggcGCGGgGAGGggGCg -3'
miRNA:   3'- -CUGCuGauGCUCC---UGCUgCUUCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 99755 0.67 0.988955
Target:  5'- cACGGCcagcACGucGGACGG-GGAGAGGCg -3'
miRNA:   3'- cUGCUGa---UGCu-CCUGCUgCUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 98815 0.67 0.988955
Target:  5'- cGGCGGCgUGCc-GGAaGACGggGggGUg -3'
miRNA:   3'- -CUGCUG-AUGcuCCUgCUGCuuCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 112033 0.67 0.988955
Target:  5'- aGCcGCcACGuGGACGAUGcGGGAGCc -3'
miRNA:   3'- cUGcUGaUGCuCCUGCUGCuUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 112924 0.67 0.988955
Target:  5'- cGCGAggGCGAGGGCGGCGcgcucGCc -3'
miRNA:   3'- cUGCUgaUGCUCCUGCUGCuucuuCG- -5'
23832 3' -50.4 NC_005261.1 + 106016 0.67 0.987451
Target:  5'- aACGACaGCGAGGACc----GGAGGCa -3'
miRNA:   3'- cUGCUGaUGCUCCUGcugcuUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 127639 0.67 0.987451
Target:  5'- cGACGGCggcgGCGccggGGGGCGcGCGGGuucGggGCg -3'
miRNA:   3'- -CUGCUGa---UGC----UCCUGC-UGCUU---CuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.