miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23833 5' -57.6 NC_005261.1 + 135020 0.67 0.81775
Target:  5'- gCCcgCacgCGGccgcgGCGGCGAGGcCGACGc -3'
miRNA:   3'- aGGuaGa--GCC-----UGCCGCUCCuGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 98574 0.67 0.81775
Target:  5'- gCCGUCcuccgCGGGCucgGGCGAGuaGGCGGCGc -3'
miRNA:   3'- aGGUAGa----GCCUG---CCGCUC--CUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 81332 0.67 0.81775
Target:  5'- gCCGUCgUCGGGgccguCGGCG-GGGCGGgGg -3'
miRNA:   3'- aGGUAG-AGCCU-----GCCGCuCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 15708 0.67 0.81775
Target:  5'- -gCGUCggcugggUGGACGGCGAacGCGACGg -3'
miRNA:   3'- agGUAGa------GCCUGCCGCUccUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 118660 0.67 0.809186
Target:  5'- gCCGcgcgCUCGG--GGCuGAGGGCGGCGg -3'
miRNA:   3'- aGGUa---GAGCCugCCG-CUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 104997 0.67 0.809186
Target:  5'- cCCAgcgCGGGCGGCGgucGGGGCGccaggGCGg -3'
miRNA:   3'- aGGUagaGCCUGCCGC---UCCUGC-----UGCa -5'
23833 5' -57.6 NC_005261.1 + 127379 0.67 0.800468
Target:  5'- gUCGUUggCGG-CGGCGAGGAgccCGGCGc -3'
miRNA:   3'- aGGUAGa-GCCuGCCGCUCCU---GCUGCa -5'
23833 5' -57.6 NC_005261.1 + 30436 0.67 0.800468
Target:  5'- aCCuggaggaGGACGGgGAGGACGAgGa -3'
miRNA:   3'- aGGuagag--CCUGCCgCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 112911 0.67 0.791603
Target:  5'- gCCGcgcugCgugCGcGAgGGCGAGGGCGGCGc -3'
miRNA:   3'- aGGUa----Ga--GC-CUgCCGCUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 1031 0.67 0.791603
Target:  5'- gCUuuugCggaGGGCGGCGGGcGGCGGCGUu -3'
miRNA:   3'- aGGua--Gag-CCUGCCGCUC-CUGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 109097 0.67 0.782599
Target:  5'- gCCAggUCcCGGAcgcCGGCcauGAGGGCGGCGg -3'
miRNA:   3'- aGGU--AGaGCCU---GCCG---CUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 3537 0.67 0.782599
Target:  5'- gCCGcCUCGGcgcgcagcGCGGCGGGcGCGGCGc -3'
miRNA:   3'- aGGUaGAGCC--------UGCCGCUCcUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 112057 0.67 0.782599
Target:  5'- gCCGgccUUCGGGCgugcccucgucGGCGAGGGCGccACGUg -3'
miRNA:   3'- aGGUa--GAGCCUG-----------CCGCUCCUGC--UGCA- -5'
23833 5' -57.6 NC_005261.1 + 85553 0.68 0.773464
Target:  5'- cUCCGUCUgCGGcGCcGCGAGGuuCGGCGc -3'
miRNA:   3'- -AGGUAGA-GCC-UGcCGCUCCu-GCUGCa -5'
23833 5' -57.6 NC_005261.1 + 98053 0.68 0.773464
Target:  5'- gCCg---CGGGCGGCGGgaccgcGGGCGGCGg -3'
miRNA:   3'- aGGuagaGCCUGCCGCU------CCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 32896 0.68 0.773464
Target:  5'- cUCCAUCgggagggaagGGGCGcGCGuggGGGGCGGCGg -3'
miRNA:   3'- -AGGUAGag--------CCUGC-CGC---UCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 34280 0.68 0.764207
Target:  5'- aCC-UCacggCGGcCGGCGGGGACGcCGg -3'
miRNA:   3'- aGGuAGa---GCCuGCCGCUCCUGCuGCa -5'
23833 5' -57.6 NC_005261.1 + 99759 0.68 0.764207
Target:  5'- gCCAgcacgUCGGACGGgGAGaGGCGGCc- -3'
miRNA:   3'- aGGUag---AGCCUGCCgCUC-CUGCUGca -5'
23833 5' -57.6 NC_005261.1 + 133721 0.68 0.764207
Target:  5'- gCCGUCUacgucgGGGCGGCGcGGACaACGc -3'
miRNA:   3'- aGGUAGAg-----CCUGCCGCuCCUGcUGCa -5'
23833 5' -57.6 NC_005261.1 + 134966 0.68 0.754837
Target:  5'- gCCggCgacgCaGACGGCGAGGACGGgGc -3'
miRNA:   3'- aGGuaGa---GcCUGCCGCUCCUGCUgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.