miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23833 5' -57.6 NC_005261.1 + 33596 0.66 0.842432
Target:  5'- aCCAggggCGGcgcCGGCGcGGGCGGCGg -3'
miRNA:   3'- aGGUaga-GCCu--GCCGCuCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 33796 0.66 0.842432
Target:  5'- cCCcgCgCGGGCGGCGGgcuugucuuuGGGCGGCc- -3'
miRNA:   3'- aGGuaGaGCCUGCCGCU----------CCUGCUGca -5'
23833 5' -57.6 NC_005261.1 + 34280 0.68 0.764207
Target:  5'- aCC-UCacggCGGcCGGCGGGGACGcCGg -3'
miRNA:   3'- aGGuAGa---GCCuGCCGCUCCUGCuGCa -5'
23833 5' -57.6 NC_005261.1 + 35274 0.66 0.842432
Target:  5'- gUgGUgaCGGGCGGUGAGGGagGACGa -3'
miRNA:   3'- aGgUAgaGCCUGCCGCUCCUg-CUGCa -5'
23833 5' -57.6 NC_005261.1 + 39371 0.7 0.656827
Target:  5'- cUCAUCggCGGcCGGgGAGGGCGGCc- -3'
miRNA:   3'- aGGUAGa-GCCuGCCgCUCCUGCUGca -5'
23833 5' -57.6 NC_005261.1 + 43600 0.72 0.517786
Target:  5'- gCCGUCUC---CGGCGAGGAgGGCGa -3'
miRNA:   3'- aGGUAGAGccuGCCGCUCCUgCUGCa -5'
23833 5' -57.6 NC_005261.1 + 43827 0.69 0.7164
Target:  5'- cUCCGUggagaagcugCUCGGcgAgGGCGAGGACG-CGg -3'
miRNA:   3'- -AGGUA----------GAGCC--UgCCGCUCCUGCuGCa -5'
23833 5' -57.6 NC_005261.1 + 48327 0.68 0.735793
Target:  5'- cCCGggCUCGGgggcgcgcGCGGCGAGGcCGAgGa -3'
miRNA:   3'- aGGUa-GAGCC--------UGCCGCUCCuGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 50632 0.73 0.489277
Target:  5'- cUCCAcg-CGGGCGGCGGGGugG-CGc -3'
miRNA:   3'- -AGGUagaGCCUGCCGCUCCugCuGCa -5'
23833 5' -57.6 NC_005261.1 + 50983 0.66 0.842432
Target:  5'- aCC-UCUCGGccgacgGCGGCGcguGGGcGCGGCGg -3'
miRNA:   3'- aGGuAGAGCC------UGCCGC---UCC-UGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 55215 0.75 0.375578
Target:  5'- aUCCGgcggCcCGaGGCGGCGAGGGCGGCa- -3'
miRNA:   3'- -AGGUa---GaGC-CUGCCGCUCCUGCUGca -5'
23833 5' -57.6 NC_005261.1 + 55985 0.72 0.508206
Target:  5'- gCCGUCgccaUCGGcaaccGCGGCGGGGGCGGgGg -3'
miRNA:   3'- aGGUAG----AGCC-----UGCCGCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 56564 0.7 0.616616
Target:  5'- gUCCuUCUCGcaccucGGCGGCGAcGACGGCGc -3'
miRNA:   3'- -AGGuAGAGC------CUGCCGCUcCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 59770 0.7 0.646783
Target:  5'- cUCCAUgugCUCGGccgcagcgACGGCGGcGGGCGGCa- -3'
miRNA:   3'- -AGGUA---GAGCC--------UGCCGCU-CCUGCUGca -5'
23833 5' -57.6 NC_005261.1 + 60837 0.67 0.82615
Target:  5'- aUCAUCggCGG-CGGCGAGGuCGcGCGc -3'
miRNA:   3'- aGGUAGa-GCCuGCCGCUCCuGC-UGCa -5'
23833 5' -57.6 NC_005261.1 + 67079 0.66 0.865456
Target:  5'- gCUcgCUCGGGCGGUccauGGcGCGACGc -3'
miRNA:   3'- aGGuaGAGCCUGCCGcu--CC-UGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 68073 0.66 0.865456
Target:  5'- gUgGUCUCGGuCGcccGCGGGGGCGGgGa -3'
miRNA:   3'- aGgUAGAGCCuGC---CGCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 68682 0.67 0.82615
Target:  5'- gUCCGcCgcgUGGGggcCGGCGcGGACGACGg -3'
miRNA:   3'- -AGGUaGa--GCCU---GCCGCuCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 74916 0.66 0.8503
Target:  5'- gCCGcgCgggGGAgGGCGAGGACGGgGa -3'
miRNA:   3'- aGGUa-Gag-CCUgCCGCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 75605 0.71 0.576582
Target:  5'- gCCG-CggacgCGGACGGCGucgcguacguGGACGACGUc -3'
miRNA:   3'- aGGUaGa----GCCUGCCGCu---------CCUGCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.