miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23833 5' -57.6 NC_005261.1 + 63 0.66 0.8503
Target:  5'- gCCGaaaUCGGcGCGcGCGGGGGCGGgGUg -3'
miRNA:   3'- aGGUag-AGCC-UGC-CGCUCCUGCUgCA- -5'
23833 5' -57.6 NC_005261.1 + 1031 0.67 0.791603
Target:  5'- gCUuuugCggaGGGCGGCGGGcGGCGGCGUu -3'
miRNA:   3'- aGGua--Gag-CCUGCCGCUC-CUGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 1108 0.66 0.8503
Target:  5'- gUCCGaggacgCGGACGaCGAGGAgGACGc -3'
miRNA:   3'- -AGGUaga---GCCUGCcGCUCCUgCUGCa -5'
23833 5' -57.6 NC_005261.1 + 1409 0.72 0.517786
Target:  5'- gCCGcggCGG-CGGCGGGGGCGGCGc -3'
miRNA:   3'- aGGUagaGCCuGCCGCUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 2831 0.73 0.452459
Target:  5'- cCCGagCUCGGGCGGCaGGGcCGGCGg -3'
miRNA:   3'- aGGUa-GAGCCUGCCGcUCCuGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 3537 0.67 0.782599
Target:  5'- gCCGcCUCGGcgcgcagcGCGGCGGGcGCGGCGc -3'
miRNA:   3'- aGGUaGAGCC--------UGCCGCUCcUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 4521 0.69 0.7164
Target:  5'- gCCcgCgCGGgcgccGCGGCGAGGGCGcCGg -3'
miRNA:   3'- aGGuaGaGCC-----UGCCGCUCCUGCuGCa -5'
23833 5' -57.6 NC_005261.1 + 10851 1.08 0.002608
Target:  5'- cUCCAUCUCGGACGGCGAGGACGACGUg -3'
miRNA:   3'- -AGGUAGAGCCUGCCGCUCCUGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 11431 0.69 0.666852
Target:  5'- ------gCGGGCGGgGGGGGCGGCGg -3'
miRNA:   3'- agguagaGCCUGCCgCUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 12421 0.66 0.842432
Target:  5'- cUCCAg---GGGCGGCgGAGGgcuuGCGGCGUc -3'
miRNA:   3'- -AGGUagagCCUGCCG-CUCC----UGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 13087 0.72 0.498702
Target:  5'- cCCGUCggCGGGCGGCGggcucggcucgGGGGCGuCGg -3'
miRNA:   3'- aGGUAGa-GCCUGCCGC-----------UCCUGCuGCa -5'
23833 5' -57.6 NC_005261.1 + 13397 0.73 0.479937
Target:  5'- gCgGUCUCGGAgCGGU-AGGGCGACGc -3'
miRNA:   3'- aGgUAGAGCCU-GCCGcUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 15152 0.68 0.745363
Target:  5'- gCCGUCcgCGGugGGgGuGGGCGuaGCGg -3'
miRNA:   3'- aGGUAGa-GCCugCCgCuCCUGC--UGCa -5'
23833 5' -57.6 NC_005261.1 + 15708 0.67 0.81775
Target:  5'- -gCGUCggcugggUGGACGGCGAacGCGACGg -3'
miRNA:   3'- agGUAGa------GCCUGCCGCUccUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 22738 0.66 0.8503
Target:  5'- gCCAg-UCGGGC-GCG-GGGCGGCGg -3'
miRNA:   3'- aGGUagAGCCUGcCGCuCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 22898 0.71 0.596549
Target:  5'- cUCCGaCgacgaGGACGaCGAGGACGACGa -3'
miRNA:   3'- -AGGUaGag---CCUGCcGCUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 24424 0.68 0.745363
Target:  5'- aUCC-UCgguugCGGuccGCGGCGAuGGACGAgGUg -3'
miRNA:   3'- -AGGuAGa----GCC---UGCCGCU-CCUGCUgCA- -5'
23833 5' -57.6 NC_005261.1 + 30436 0.67 0.800468
Target:  5'- aCCuggaggaGGACGGgGAGGACGAgGa -3'
miRNA:   3'- aGGuagag--CCUGCCgCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 30567 0.71 0.556769
Target:  5'- gCCGgggcCUCGGACGGggaCGGGGACGGgGa -3'
miRNA:   3'- aGGUa---GAGCCUGCC---GCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 32896 0.68 0.773464
Target:  5'- cUCCAUCgggagggaagGGGCGcGCGuggGGGGCGGCGg -3'
miRNA:   3'- -AGGUAGag--------CCUGC-CGC---UCCUGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.