Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23833 | 5' | -57.6 | NC_005261.1 | + | 10851 | 1.08 | 0.002608 |
Target: 5'- cUCCAUCUCGGACGGCGAGGACGACGUg -3' miRNA: 3'- -AGGUAGAGCCUGCCGCUCCUGCUGCA- -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 115768 | 0.76 | 0.344358 |
Target: 5'- cCCGUCUCGG-CGGCGucGACGuacGCGUa -3' miRNA: 3'- aGGUAGAGCCuGCCGCucCUGC---UGCA- -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 77766 | 0.75 | 0.351985 |
Target: 5'- gCCG----GGGCGGCGGGGACGACGa -3' miRNA: 3'- aGGUagagCCUGCCGCUCCUGCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 55215 | 0.75 | 0.375578 |
Target: 5'- aUCCGgcggCcCGaGGCGGCGAGGGCGGCa- -3' miRNA: 3'- -AGGUa---GaGC-CUGCCGCUCCUGCUGca -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 2831 | 0.73 | 0.452459 |
Target: 5'- cCCGagCUCGGGCGGCaGGGcCGGCGg -3' miRNA: 3'- aGGUa-GAGCCUGCCGcUCCuGCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 13397 | 0.73 | 0.479937 |
Target: 5'- gCgGUCUCGGAgCGGU-AGGGCGACGc -3' miRNA: 3'- aGgUAGAGCCU-GCCGcUCCUGCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 50632 | 0.73 | 0.489277 |
Target: 5'- cUCCAcg-CGGGCGGCGGGGugG-CGc -3' miRNA: 3'- -AGGUagaGCCUGCCGCUCCugCuGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 13087 | 0.72 | 0.498702 |
Target: 5'- cCCGUCggCGGGCGGCGggcucggcucgGGGGCGuCGg -3' miRNA: 3'- aGGUAGa-GCCUGCCGC-----------UCCUGCuGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 55985 | 0.72 | 0.508206 |
Target: 5'- gCCGUCgccaUCGGcaaccGCGGCGGGGGCGGgGg -3' miRNA: 3'- aGGUAG----AGCC-----UGCCGCUCCUGCUgCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 43600 | 0.72 | 0.517786 |
Target: 5'- gCCGUCUC---CGGCGAGGAgGGCGa -3' miRNA: 3'- aGGUAGAGccuGCCGCUCCUgCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 1409 | 0.72 | 0.517786 |
Target: 5'- gCCGcggCGG-CGGCGGGGGCGGCGc -3' miRNA: 3'- aGGUagaGCCuGCCGCUCCUGCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 30567 | 0.71 | 0.556769 |
Target: 5'- gCCGgggcCUCGGACGGggaCGGGGACGGgGa -3' miRNA: 3'- aGGUa---GAGCCUGCC---GCUCCUGCUgCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 121557 | 0.71 | 0.566653 |
Target: 5'- gCCGUcCUCGGcgaAgGGCGGGGACGAgGc -3' miRNA: 3'- aGGUA-GAGCC---UgCCGCUCCUGCUgCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 75605 | 0.71 | 0.576582 |
Target: 5'- gCCG-CggacgCGGACGGCGucgcguacguGGACGACGUc -3' miRNA: 3'- aGGUaGa----GCCUGCCGCu---------CCUGCUGCA- -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 91400 | 0.71 | 0.576582 |
Target: 5'- aUCGUCgCGccCGGCGAGGACGugGa -3' miRNA: 3'- aGGUAGaGCcuGCCGCUCCUGCugCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 22898 | 0.71 | 0.596549 |
Target: 5'- cUCCGaCgacgaGGACGaCGAGGACGACGa -3' miRNA: 3'- -AGGUaGag---CCUGCcGCUCCUGCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 56564 | 0.7 | 0.616616 |
Target: 5'- gUCCuUCUCGcaccucGGCGGCGAcGACGGCGc -3' miRNA: 3'- -AGGuAGAGC------CUGCCGCUcCUGCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 107175 | 0.7 | 0.620637 |
Target: 5'- cUCCGUCUCGGcgGCGuagcccugcagccgcGCGAaGGCGGCGUg -3' miRNA: 3'- -AGGUAGAGCC--UGC---------------CGCUcCUGCUGCA- -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 130483 | 0.7 | 0.626671 |
Target: 5'- -gCGUgcCUCGG-CGGCGAGGgccccgACGACGUg -3' miRNA: 3'- agGUA--GAGCCuGCCGCUCC------UGCUGCA- -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 109776 | 0.7 | 0.633711 |
Target: 5'- gCCGUCUCGGGCGucccggccgcugcuGCGAcGGcCGGCGc -3' miRNA: 3'- aGGUAGAGCCUGC--------------CGCU-CCuGCUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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