miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23833 5' -57.6 NC_005261.1 + 97806 0.65 0.870572
Target:  5'- aCCGUC-CGccggcgcccccgcaGACGGCGgcaaaaacgGGGGCGGCGg -3'
miRNA:   3'- aGGUAGaGC--------------CUGCCGC---------UCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 121557 0.71 0.566653
Target:  5'- gCCGUcCUCGGcgaAgGGCGGGGACGAgGc -3'
miRNA:   3'- aGGUA-GAGCC---UgCCGCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 75605 0.71 0.576582
Target:  5'- gCCG-CggacgCGGACGGCGucgcguacguGGACGACGUc -3'
miRNA:   3'- aGGUaGa----GCCUGCCGCu---------CCUGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 91400 0.71 0.576582
Target:  5'- aUCGUCgCGccCGGCGAGGACGugGa -3'
miRNA:   3'- aGGUAGaGCcuGCCGCUCCUGCugCa -5'
23833 5' -57.6 NC_005261.1 + 22898 0.71 0.596549
Target:  5'- cUCCGaCgacgaGGACGaCGAGGACGACGa -3'
miRNA:   3'- -AGGUaGag---CCUGCcGCUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 56564 0.7 0.616616
Target:  5'- gUCCuUCUCGcaccucGGCGGCGAcGACGGCGc -3'
miRNA:   3'- -AGGuAGAGC------CUGCCGCUcCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 107175 0.7 0.620637
Target:  5'- cUCCGUCUCGGcgGCGuagcccugcagccgcGCGAaGGCGGCGUg -3'
miRNA:   3'- -AGGUAGAGCC--UGC---------------CGCUcCUGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 130483 0.7 0.626671
Target:  5'- -gCGUgcCUCGG-CGGCGAGGgccccgACGACGUg -3'
miRNA:   3'- agGUA--GAGCCuGCCGCUCC------UGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 109776 0.7 0.633711
Target:  5'- gCCGUCUCGGGCGucccggccgcugcuGCGAcGGcCGGCGc -3'
miRNA:   3'- aGGUAGAGCCUGC--------------CGCU-CCuGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 30567 0.71 0.556769
Target:  5'- gCCGgggcCUCGGACGGggaCGGGGACGGgGa -3'
miRNA:   3'- aGGUa---GAGCCUGCC---GCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 43600 0.72 0.517786
Target:  5'- gCCGUCUC---CGGCGAGGAgGGCGa -3'
miRNA:   3'- aGGUAGAGccuGCCGCUCCUgCUGCa -5'
23833 5' -57.6 NC_005261.1 + 1409 0.72 0.517786
Target:  5'- gCCGcggCGG-CGGCGGGGGCGGCGc -3'
miRNA:   3'- aGGUagaGCCuGCCGCUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 115768 0.76 0.344358
Target:  5'- cCCGUCUCGG-CGGCGucGACGuacGCGUa -3'
miRNA:   3'- aGGUAGAGCCuGCCGCucCUGC---UGCA- -5'
23833 5' -57.6 NC_005261.1 + 77766 0.75 0.351985
Target:  5'- gCCG----GGGCGGCGGGGACGACGa -3'
miRNA:   3'- aGGUagagCCUGCCGCUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 55215 0.75 0.375578
Target:  5'- aUCCGgcggCcCGaGGCGGCGAGGGCGGCa- -3'
miRNA:   3'- -AGGUa---GaGC-CUGCCGCUCCUGCUGca -5'
23833 5' -57.6 NC_005261.1 + 2831 0.73 0.452459
Target:  5'- cCCGagCUCGGGCGGCaGGGcCGGCGg -3'
miRNA:   3'- aGGUa-GAGCCUGCCGcUCCuGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 13397 0.73 0.479937
Target:  5'- gCgGUCUCGGAgCGGU-AGGGCGACGc -3'
miRNA:   3'- aGgUAGAGCCU-GCCGcUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 50632 0.73 0.489277
Target:  5'- cUCCAcg-CGGGCGGCGGGGugG-CGc -3'
miRNA:   3'- -AGGUagaGCCUGCCGCUCCugCuGCa -5'
23833 5' -57.6 NC_005261.1 + 13087 0.72 0.498702
Target:  5'- cCCGUCggCGGGCGGCGggcucggcucgGGGGCGuCGg -3'
miRNA:   3'- aGGUAGa-GCCUGCCGC-----------UCCUGCuGCa -5'
23833 5' -57.6 NC_005261.1 + 55985 0.72 0.508206
Target:  5'- gCCGUCgccaUCGGcaaccGCGGCGGGGGCGGgGg -3'
miRNA:   3'- aGGUAG----AGCC-----UGCCGCUCCUGCUgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.