miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23833 5' -57.6 NC_005261.1 + 137746 0.66 0.8503
Target:  5'- gCCGaaaUCGGcGCGcGCGGGGGCGGgGUg -3'
miRNA:   3'- aGGUag-AGCC-UGC-CGCUCCUGCUgCA- -5'
23833 5' -57.6 NC_005261.1 + 135020 0.67 0.81775
Target:  5'- gCCcgCacgCGGccgcgGCGGCGAGGcCGACGc -3'
miRNA:   3'- aGGuaGa--GCC-----UGCCGCUCCuGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 134966 0.68 0.754837
Target:  5'- gCCggCgacgCaGACGGCGAGGACGGgGc -3'
miRNA:   3'- aGGuaGa---GcCUGCCGCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 133721 0.68 0.764207
Target:  5'- gCCGUCUacgucgGGGCGGCGcGGACaACGc -3'
miRNA:   3'- aGGUAGAg-----CCUGCCGCuCCUGcUGCa -5'
23833 5' -57.6 NC_005261.1 + 130483 0.7 0.626671
Target:  5'- -gCGUgcCUCGG-CGGCGAGGgccccgACGACGUg -3'
miRNA:   3'- agGUA--GAGCCuGCCGCUCC------UGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 127379 0.67 0.800468
Target:  5'- gUCGUUggCGG-CGGCGAGGAgccCGGCGc -3'
miRNA:   3'- aGGUAGa-GCCuGCCGCUCCU---GCUGCa -5'
23833 5' -57.6 NC_005261.1 + 125404 0.68 0.754837
Target:  5'- -aCGUUcCGGAgCGGCGcGGGCGGCGc -3'
miRNA:   3'- agGUAGaGCCU-GCCGCuCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 121557 0.71 0.566653
Target:  5'- gCCGUcCUCGGcgaAgGGCGGGGACGAgGc -3'
miRNA:   3'- aGGUA-GAGCC---UgCCGCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 118660 0.67 0.809186
Target:  5'- gCCGcgcgCUCGG--GGCuGAGGGCGGCGg -3'
miRNA:   3'- aGGUa---GAGCCugCCG-CUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 115768 0.76 0.344358
Target:  5'- cCCGUCUCGG-CGGCGucGACGuacGCGUa -3'
miRNA:   3'- aGGUAGAGCCuGCCGCucCUGC---UGCA- -5'
23833 5' -57.6 NC_005261.1 + 112911 0.67 0.791603
Target:  5'- gCCGcgcugCgugCGcGAgGGCGAGGGCGGCGc -3'
miRNA:   3'- aGGUa----Ga--GC-CUgCCGCUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 112057 0.67 0.782599
Target:  5'- gCCGgccUUCGGGCgugcccucgucGGCGAGGGCGccACGUg -3'
miRNA:   3'- aGGUa--GAGCCUG-----------CCGCUCCUGC--UGCA- -5'
23833 5' -57.6 NC_005261.1 + 110888 0.68 0.735793
Target:  5'- cCCGUCUCGcGGCugGGCGAcuGCGACGc -3'
miRNA:   3'- aGGUAGAGC-CUG--CCGCUccUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 109776 0.7 0.633711
Target:  5'- gCCGUCUCGGGCGucccggccgcugcuGCGAcGGcCGGCGc -3'
miRNA:   3'- aGGUAGAGCCUGC--------------CGCU-CCuGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 109097 0.67 0.782599
Target:  5'- gCCAggUCcCGGAcgcCGGCcauGAGGGCGGCGg -3'
miRNA:   3'- aGGU--AGaGCCU---GCCG---CUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 107175 0.7 0.620637
Target:  5'- cUCCGUCUCGGcgGCGuagcccugcagccgcGCGAaGGCGGCGUg -3'
miRNA:   3'- -AGGUAGAGCC--UGC---------------CGCUcCUGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 104997 0.67 0.809186
Target:  5'- cCCAgcgCGGGCGGCGgucGGGGCGccaggGCGg -3'
miRNA:   3'- aGGUagaGCCUGCCGC---UCCUGC-----UGCa -5'
23833 5' -57.6 NC_005261.1 + 104166 0.69 0.690784
Target:  5'- gCCGUCcgCGGGCGccGCGcgcgggucgucgggcGGGACGGCGUc -3'
miRNA:   3'- aGGUAGa-GCCUGC--CGC---------------UCCUGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 104079 0.7 0.656827
Target:  5'- gUCCAgCUCGG-CGGacAGGGCGGCGg -3'
miRNA:   3'- -AGGUaGAGCCuGCCgcUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 99759 0.68 0.764207
Target:  5'- gCCAgcacgUCGGACGGgGAGaGGCGGCc- -3'
miRNA:   3'- aGGUag---AGCCUGCCgCUC-CUGCUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.