miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 3' -50.7 NC_005261.1 + 11540 1.14 0.004581
Target:  5'- cCCCGCGUUGGGCGAAAAAAGAAGGGGg -3'
miRNA:   3'- -GGGCGCAACCCGCUUUUUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 90126 0.85 0.298251
Target:  5'- gCCCGCGgcgaGGGCGA----GGAGGGGGg -3'
miRNA:   3'- -GGGCGCaa--CCCGCUuuuuUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 32934 0.83 0.37587
Target:  5'- --gGCGggggggGGGCGggGAGGGGAGGGGa -3'
miRNA:   3'- gggCGCaa----CCCGCuuUUUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 22764 0.8 0.505109
Target:  5'- cCCaCGCGUcuggGGGCGGGccccgcGAGAAGGGGg -3'
miRNA:   3'- -GG-GCGCAa---CCCGCUUuu----UUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 22980 0.8 0.505109
Target:  5'- aCCGgGaggagGcGGCGGAGGAAGAGGGGGg -3'
miRNA:   3'- gGGCgCaa---C-CCGCUUUUUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 32989 0.79 0.525175
Target:  5'- aCCGCGgaggaggGGGCcgaccgggGAAGGGGGGAGGGGg -3'
miRNA:   3'- gGGCGCaa-----CCCG--------CUUUUUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 7988 0.78 0.60789
Target:  5'- gCCCGg--UGGGagaGggGGGAGAGGGGGg -3'
miRNA:   3'- -GGGCgcaACCCg--CuuUUUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 24283 0.77 0.627856
Target:  5'- gCCCGgGUggGGGUGggGGGccaggaugaggguGGggGGGGg -3'
miRNA:   3'- -GGGCgCAa-CCCGCuuUUU-------------UCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 78409 0.77 0.628908
Target:  5'- cUCCGUGcucugUGGGCGAu---GGggGGGGc -3'
miRNA:   3'- -GGGCGCa----ACCCGCUuuuuUCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 33103 0.77 0.669858
Target:  5'- cCCUGCGUcGGGCacucgcccuccgcGAacaGAGGGGGAGGGGg -3'
miRNA:   3'- -GGGCGCAaCCCG-------------CU---UUUUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 11785 0.77 0.670904
Target:  5'- aUuuGCG--GGGCgGAGGGGGGAAGGGGg -3'
miRNA:   3'- -GggCGCaaCCCG-CUUUUUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 26866 0.76 0.702081
Target:  5'- --aGCGUgaaugGGGCGggGGuggguGGggGGGGg -3'
miRNA:   3'- gggCGCAa----CCCGCuuUUu----UCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 84098 0.76 0.712362
Target:  5'- -aUGCGccacggGGGCGGGAugGGGAGGGGg -3'
miRNA:   3'- ggGCGCaa----CCCGCUUUuuUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 470 0.75 0.741734
Target:  5'- gCCgGCGggaUGGcGCGggGaggagagGAGGGAGGGGg -3'
miRNA:   3'- -GGgCGCa--ACC-CGCuuU-------UUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 138141 0.75 0.741734
Target:  5'- gCCgGCGggaUGGcGCGggGaggagagGAGGGAGGGGg -3'
miRNA:   3'- -GGgCGCa--ACC-CGCuuU-------UUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 28007 0.75 0.741734
Target:  5'- cUCCGCGaaaggGGGcCGGcggggagGAGAGGGAGGGGa -3'
miRNA:   3'- -GGGCGCaa---CCC-GCU-------UUUUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 8828 0.75 0.742733
Target:  5'- gCCCGcCGggcaaggGGGCGggGAcaggccguGGGAGGGGc -3'
miRNA:   3'- -GGGC-GCaa-----CCCGCuuUUu-------UCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 56001 0.74 0.800451
Target:  5'- aCCGCGgcggGGGCGG----GGgcGGGGa -3'
miRNA:   3'- gGGCGCaa--CCCGCUuuuuUCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 5288 0.74 0.818506
Target:  5'- gCCGCGgugcgcgcGGGUcccuggagaGGAGGAGGAGGGGGu -3'
miRNA:   3'- gGGCGCaa------CCCG---------CUUUUUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 137710 0.73 0.852405
Target:  5'- cCCCGCGcgaccccgggGGGUGuuuuuuGGggGGGGg -3'
miRNA:   3'- -GGGCGCaa--------CCCGCuuuuu-UCuuCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.